Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31253
95 % 1 2 25756 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 10963
70 % 2 6 10408
50 % 2 6 9425
40 % 2 6 8628
30 % 2 6 7596
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4098
95 % 14 15 2297 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 21 1670
70 % 17 21 1689
50 % 18 22 1549
40 % 18 22 1566
30 % 35 46 589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PHJ 1 A, B Calpain small subunit 1 Penta EF-hands subunit, Residues 96-268 9606
2 4WQ2 1 A, B Calpain small subunit 1 Protease domain, UNP residues 92-268 9606
3 4WQ3 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
4 4PHN 1 A, B Calpain small subunit 1 PEF(S) domain VI, residues 94-266 9823
5 1ALV 1 A, B CALPAIN CALCIUM BINDING DOMAIN VI 9823
6 5D69 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
7 4PHM 1 A, B Calpain small subunit 1 residues 96-268 9606
8 1NX1 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
9 1ALW 1 A, B CALPAIN INHIBITOR-BOUND CALCIUM BINDING DOMAIN VI 9823
10 4PHK 1 A, B Calpain small subunit 1 residues 96-268 9606
11 1NX2 1 A Calcium-dependent protease, small subunit Domain VI 9823
12 1NX0 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
13 1NX3 1 A Calcium-dependent protease, small subunit Domain VI 9823
14 1KFU 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
15 1KFX 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606