Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32002
95 % 1 2 26337 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 11277
70 % 2 6 10689
50 % 2 6 9668
40 % 2 6 8850
30 % 2 6 7784
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4225
95 % 14 15 2373 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 21 1729
70 % 17 21 1747
50 % 18 22 1595
40 % 18 22 1604
30 % 35 46 599

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PHJ 1 A, B Calpain small subunit 1 Penta EF-hands subunit, Residues 96-268 9606
2 4WQ2 1 A, B Calpain small subunit 1 Protease domain, UNP residues 92-268 9606
3 4WQ3 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
4 4PHN 1 A, B Calpain small subunit 1 PEF(S) domain VI, residues 94-266 9823
5 1ALV 1 A, B CALPAIN CALCIUM BINDING DOMAIN VI 9823
6 5D69 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
7 4PHM 1 A, B Calpain small subunit 1 residues 96-268 9606
8 1NX1 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
9 1ALW 1 A, B CALPAIN INHIBITOR-BOUND CALCIUM BINDING DOMAIN VI 9823
10 4PHK 1 A, B Calpain small subunit 1 residues 96-268 9606
11 1NX2 1 A Calcium-dependent protease, small subunit Domain VI 9823
12 1DVI 1 A, B CALPAIN SMALL (REGULATORY) SUBUNIT, DOMAIN VI, RESIDUES 87 - 270 10116
13 1NX0 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
14 3BOW 2 B Calpain small subunit 1 UNP residues 88-270 10116 3.4.22.53 | Details
15 1AJ5 1 A, B CALPAIN SMALL REGULATORY SUBUNIT, DOMAIN VI, MET 87 - SER 270 10116
16 4OKH 1 A, B, C Calpain-3 penta EF-hand domain 9606 3.4.22.54 | Details
17 1NX3 1 A Calcium-dependent protease, small subunit Domain VI 9823
18 1KFU 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
19 1DF0 2 B CALPAIN DOMAIN VI (CALCIUM-BINDING DOMAIN), SMALL (REGULATORY) SUBUNIT 10116
20 1U5I 2 B Calpain small subunit 1 residues 1-184 10116
21 3DF0 2 B Calpain small subunit 1 UNP residues 87-270 10116
22 1KFX 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606