Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31046
95 % 1 2 25604 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 10901
70 % 2 6 10350
50 % 2 6 9374
40 % 2 6 8585
30 % 2 6 7559
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4072
95 % 14 15 2280 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 21 1661
70 % 17 21 1677
50 % 18 22 1544
40 % 18 22 1559
30 % 35 46 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PHJ 1 A, B Calpain small subunit 1 Penta EF-hands subunit, Residues 96-268 9606
2 4WQ2 1 A, B Calpain small subunit 1 Protease domain, UNP residues 92-268 9606
3 4USL 1 A SORCIN 9606
4 5JJG 1 A Pcalcium-binding protein ALG-2, rogrammed cell death protein 6 10090
5 2ZND 1 A Programmed cell death protein 6 residues 20-191 9606
6 1K94 1 A, B GRANCALCIN residues 53-217 9606
7 4WQ3 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
8 4PHN 1 A, B Calpain small subunit 1 PEF(S) domain VI, residues 94-266 9823
9 1ALV 1 A, B CALPAIN CALCIUM BINDING DOMAIN VI 9823
10 1Y1X 1 A, B Leishmania Major Homolog of Programmed Cell Death 6 Protein Residues 53-234 5664
11 1K95 1 A GRANCALCIN residues 53-217 9606
12 1F4Q 1 A, B GRANCALCIN 9606
13 5D69 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
14 4UPG 1 A SORCIN RESIDUES 30-198 9606
15 4PHM 1 A, B Calpain small subunit 1 residues 96-268 9606
16 1NX1 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
17 1ALW 1 A, B CALPAIN INHIBITOR-BOUND CALCIUM BINDING DOMAIN VI 9823
18 5GQQ 2 C, D Programmed cell death protein 6 UNP RESIDUES 24-191 9606
19 4PHK 1 A, B Calpain small subunit 1 residues 96-268 9606
20 4U8D 1 A, B Sorcin 9606
21 1NX2 1 A Calcium-dependent protease, small subunit Domain VI 9823
22 1JUO 1 A, B sorcin 9606
23 2ZNE 1 A, B Programmed cell death protein 6 residues 2-191 9606
24 1DVI 1 A, B CALPAIN SMALL (REGULATORY) SUBUNIT, DOMAIN VI, RESIDUES 87 - 270 10116
25 1GJY 1 A, B, C, D SORCIN 10029
26 1NX0 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
27 3AAJ 1 A, B Programmed cell death protein 6 residues 2-191 9606
28 3BOW 2 B Calpain small subunit 1 UNP residues 88-270 10116 3.4.22.53 | Details
29 1AJ5 1 A, B CALPAIN SMALL REGULATORY SUBUNIT, DOMAIN VI, MET 87 - SER 270 10116
30 4OKH 1 A, B, C Calpain-3 penta EF-hand domain 9606 3.4.22.54 | Details
31 1NX3 1 A Calcium-dependent protease, small subunit Domain VI 9823
32 3WXA 1 A, B Programmed cell death protein 6 UNP residues 20-191 9606
33 1HQV 1 A PROGRAMMED CELL DEATH PROTEIN 6 10090
34 2ZN9 1 A, B Programmed cell death protein 6 residues 20-191 9606
35 1KFU 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
36 1F4O 1 A, B GRANCALCIN 9606
37 1DF0 2 B CALPAIN DOMAIN VI (CALCIUM-BINDING DOMAIN), SMALL (REGULATORY) SUBUNIT 10116
38 2ZN8 1 A Programmed cell death protein 6 9606
39 1U5I 2 B Calpain small subunit 1 residues 1-184 10116
40 2JC2 1 A, B, C, D SORCIN 9606
41 2ZRT 1 A, B, C, D, E, F, G, H Programmed cell death protein 6 UNP residues 24-191 9606
42 3AAK 1 A Programmed cell death protein 6 residues 2-191 9606
43 3DF0 2 B Calpain small subunit 1 UNP residues 87-270 10116
44 2ZRS 1 A, B, C, D, E, F, G, H Programmed cell death protein 6 UNP residues 24-191 9606
45 1KFX 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
46 5MRA 1 A, B, C, D Sorcin 9606