Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39038
95 % 1 2 33051 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 12895
70 % 2 6 11439
50 % 2 6 10241
40 % 2 6 9255
30 % 2 6 7947
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4777
95 % 14 15 2388 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 17 21 1758
70 % 17 21 1768
50 % 18 22 1628
40 % 18 22 1615
30 % 34 45 638

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PHJ 1 A, B Calpain small subunit 1 Penta EF-hands subunit, Residues 96-268 9606
2 4WQ2 1 A, B Calpain small subunit 1 Protease domain, UNP residues 92-268 9606
3 4USL 1 A SORCIN 9606 1.1.1.284 | Details
4 5JJG 1 A Pcalcium-binding protein ALG-2, rogrammed cell death protein 6 10090
5 2ZND 1 A Programmed cell death protein 6 residues 20-191 9606
6 1K94 1 A, B GRANCALCIN residues 53-217 9606
7 4WQ3 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
8 4PHN 1 A, B Calpain small subunit 1 PEF(S) domain VI, residues 94-266 9823
9 1ALV 1 A, B CALPAIN CALCIUM BINDING DOMAIN VI 9823
10 1K95 1 A GRANCALCIN residues 53-217 9606
11 1F4Q 1 A, B GRANCALCIN 9606
12 5D69 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
13 4UPG 1 A SORCIN RESIDUES 30-198 9606 1.1.1.284 | Details
14 4PHM 1 A, B Calpain small subunit 1 residues 96-268 9606
15 1NX1 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
16 1ALW 1 A, B CALPAIN INHIBITOR-BOUND CALCIUM BINDING DOMAIN VI 9823
17 5GQQ 2 C, D Programmed cell death protein 6 UNP RESIDUES 24-191 9606
18 4PHK 1 A, B Calpain small subunit 1 residues 96-268 9606
19 4U8D 1 A, B Sorcin 9606 1.1.1.284 | Details
20 1NX2 1 A Calcium-dependent protease, small subunit Domain VI 9823
21 1JUO 1 A, B sorcin 9606 1.1.1.284 | Details
22 2ZNE 1 A, B Programmed cell death protein 6 residues 2-191 9606
23 1DVI 1 A, B CALPAIN SMALL (REGULATORY) SUBUNIT, DOMAIN VI, RESIDUES 87 - 270 10116
24 1GJY 1 A, B, C, D SORCIN 10029
25 1NX0 1 A, B Calcium-dependent protease, small subunit Domain VI 9823
26 3AAJ 1 A, B Programmed cell death protein 6 residues 2-191 9606
27 3BOW 2 B Calpain small subunit 1 UNP residues 88-270 10116 3.4.22.53 | Details
28 1AJ5 1 A, B CALPAIN SMALL REGULATORY SUBUNIT, DOMAIN VI, MET 87 - SER 270 10116
29 4OKH 1 A, B, C Calpain-3 penta EF-hand domain 9606 3.4.22.54 | Details
30 1NX3 1 A Calcium-dependent protease, small subunit Domain VI 9823
31 3WXA 1 A, B Programmed cell death protein 6 UNP residues 20-191 9606
32 1HQV 1 A PROGRAMMED CELL DEATH PROTEIN 6 10090
33 2ZN9 1 A, B Programmed cell death protein 6 residues 20-191 9606
34 1KFU 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
35 1F4O 1 A, B GRANCALCIN 9606
36 1DF0 2 B CALPAIN DOMAIN VI (CALCIUM-BINDING DOMAIN), SMALL (REGULATORY) SUBUNIT 10116
37 2ZN8 1 A Programmed cell death protein 6 9606
38 1U5I 2 B Calpain small subunit 1 residues 1-184 10116
39 2JC2 1 A, B, C, D SORCIN 9606 1.1.1.284 | Details
40 2ZRT 1 A, B, C, D, E, F, G, H Programmed cell death protein 6 UNP residues 24-191 9606
41 3AAK 1 A Programmed cell death protein 6 residues 2-191 9606
42 3DF0 2 B Calpain small subunit 1 UNP residues 87-270 10116
43 2ZRS 1 A, B, C, D, E, F, G, H Programmed cell death protein 6 UNP residues 24-191 9606
44 1KFX 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
45 5MRA 1 A, B, C, D Sorcin 9606 1.1.1.284 | Details