Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39038
95 % 1 2 33051 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 12895
70 % 2 6 11439
50 % 2 6 10241
40 % 2 6 9255
30 % 2 6 7947
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4777
95 % 14 15 2388 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 17 21 1758
70 % 17 21 1768
50 % 18 22 1628
40 % 18 22 1615
30 % 34 45 638

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PHJ 1 A, B Calpain small subunit 1 Penta EF-hands subunit, Residues 96-268 9606
2 4WQ2 1 A, B Calpain small subunit 1 Protease domain, UNP residues 92-268 9606
3 4WQ3 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
4 5D69 1 A, B Calpain small subunit 1 UNP residues 96-268 9606
5 4PHM 1 A, B Calpain small subunit 1 residues 96-268 9606
6 4PHK 1 A, B Calpain small subunit 1 residues 96-268 9606
7 1KFU 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606
8 1KFX 2 S M-CALPAIN SMALL SUBUNIT REGULATORY SUBUNIT 9606