Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31951
95 % 1 2 26297 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 11260
70 % 2 6 10676
50 % 2 6 9660
40 % 2 6 8842
30 % 2 6 7778
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4221
95 % 14 15 2372 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 21 1727
70 % 17 21 1745
50 % 18 22 1592
40 % 18 22 1601
30 % 35 46 597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KFU 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details
2 1KFX 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details