Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30999
95 % 1 2 25561 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 10892
70 % 2 6 10338
50 % 2 6 9362
40 % 2 6 8574
30 % 2 6 7551
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4067
95 % 14 15 2280 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 21 1661
70 % 17 21 1677
50 % 18 22 1543
40 % 18 22 1558
30 % 35 46 584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BOW 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
2 1KFU 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details
3 1DF0 1 A M-CALPAIN LARGE (CATALYTIC) SUBUNIT 10116 3.4.22.53 | Details
4 1U5I 1 A Calpain 2, large [catalytic] subunit precursor 10116 3.4.22.53 | Details
5 3DF0 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
6 1KFX 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details