Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39660
95 % 1 2 33544 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 13097
70 % 2 6 11638
50 % 2 6 10412
40 % 2 6 9407
30 % 2 6 8081
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4745
95 % 14 15 2430 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 17 21 1796
70 % 17 21 1810
50 % 18 22 1670
40 % 18 22 1660
30 % 34 45 660

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BOW 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
2 1KFU 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details
3 1DF0 1 A M-CALPAIN LARGE (CATALYTIC) SUBUNIT 10116 3.4.22.53 | Details
4 1U5I 1 A Calpain 2, large [catalytic] subunit precursor 10116 3.4.22.53 | Details
5 3DF0 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
6 1KFX 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details