Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38498
95 % 1 2 32603 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 12721
70 % 2 6 11294
50 % 2 6 10117
40 % 2 6 9160
30 % 2 6 7868
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4717
95 % 14 15 2342 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 21 1717
70 % 17 21 1725
50 % 18 22 1595
40 % 18 22 1585
30 % 34 45 632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BOW 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
2 1KFU 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details
3 1DF0 1 A M-CALPAIN LARGE (CATALYTIC) SUBUNIT 10116 3.4.22.53 | Details
4 1U5I 1 A Calpain 2, large [catalytic] subunit precursor 10116 3.4.22.53 | Details
5 3DF0 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
6 1KFX 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details