Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40247
95 % 1 2 34055 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 13304
70 % 2 6 11823
50 % 2 6 10553
40 % 2 6 9521
30 % 2 6 8167
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4827
95 % 14 15 2464 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 17 21 1817
70 % 17 21 1834
50 % 18 22 1692
40 % 18 22 1683
30 % 34 45 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BOW 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
2 1KFU 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details
3 1DF0 1 A M-CALPAIN LARGE (CATALYTIC) SUBUNIT 10116 3.4.22.53 | Details
4 1U5I 1 A Calpain 2, large [catalytic] subunit precursor 10116 3.4.22.53 | Details
5 3DF0 1 A Calpain-2 catalytic subunit 10116 3.4.22.53 | Details
6 1KFX 1 L M-CALPAIN LARGE SUBUNIT CATALYTIC SUBUNIT 9606 3.4.22.53 | Details