Sequence Similarity Clusters for the Entities in PDB 1KFU

Entity #1 | Chains: L
M-CALPAIN LARGE SUBUNIT protein, length: 699 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41343
95 % 1 2 34924 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 6 13696
70 % 2 6 12143
50 % 2 6 10840
40 % 2 6 9776
30 % 2 6 8388
Entity #2 | Chains: S
M-CALPAIN SMALL SUBUNIT protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4992
95 % 14 15 2551 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 17 21 1876
70 % 17 21 1900
50 % 18 22 1739
40 % 18 22 1733
30 % 34 45 705

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures