Sequence Similarity Clusters for the Entities in PDB 1KFM

Entity #1 | Chains: A
MAJOR OUTER MEMBRANE LIPOPROTEIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54882
95 % 3 3 24125 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 5 5 7981
70 % 8 8 3425
50 % 8 8 3340
40 % 8 8 3219
30 % 8 8 2976

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JCD 1 A, B, C MAJOR OUTER MEMBRANE LIPOPROTEIN 562
2 1JCC 1 A, B, C MAJOR OUTER MEMBRANE LIPOPROTEIN 562
3 1KFN 1 A MAJOR OUTER MEMBRANE LIPOPROTEIN 562
4 1EQ7 1 A OUTER MEMBRANE LIPOPROTEIN PROTEIN MOIETY 562
5 1KFM 1 A MAJOR OUTER MEMBRANE LIPOPROTEIN 562