Sequence Similarity Clusters for the Entities in PDB 1KFA

Entity #1 | Chains: L,M
monoclonal antibody light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40543
95 % 142 146 145 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 152 156 146
70 % 1905 2327 1
50 % 3865 4713 1
40 % 3865 4713 1
30 % 4582 5567 1
Entity #2 | Chains: H,I
monoclonal antibody heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40147
95 % 1 1 30738 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29575
70 % 1866 2280 2
50 % 3866 4713 1
40 % 3866 4713 1
30 % 4583 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.