Sequence Similarity Clusters for the Entities in PDB 1KFA

Entity #1 | Chains: L,M
monoclonal antibody light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41154
95 % 142 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 152 156 149
70 % 1961 2392 1
50 % 3977 4843 1
40 % 3977 4843 1
30 % 4701 5705 1
Entity #2 | Chains: H,I
monoclonal antibody heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40753
95 % 1 1 31189 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29998
70 % 1919 2342 2
50 % 3978 4843 1
40 % 3978 4843 1
30 % 4702 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures