Sequence Similarity Clusters for the Entities in PDB 1KFA

Entity #1 | Chains: L,M
monoclonal antibody light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41968
95 % 142 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 152 158 148
70 % 2026 2474 1
50 % 4111 5011 1
40 % 4111 5011 1
30 % 4901 5941 1
Entity #2 | Chains: H,I
monoclonal antibody heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41559
95 % 1 1 31756 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 30525
70 % 1984 2424 2
50 % 4112 5011 1
40 % 4112 5011 1
30 % 4902 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures