Sequence Similarity Clusters for the Entities in PDB 1KFA

Entity #1 | Chains: L,M
monoclonal antibody light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39090
95 % 140 143 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 150 153 149
70 % 1528 1822 2
50 % 3722 4489 1
40 % 3722 4489 1
30 % 4391 5290 1
Entity #2 | Chains: H,I
monoclonal antibody heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38701
95 % 1 1 29652
90 % 1 1 28548
70 % 1799 2172 1
50 % 3723 4489 1
40 % 3723 4489 1
30 % 4392 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.