Sequence Similarity Clusters for the Entities in PDB 1KFA

Entity #1 | Chains: L,M
monoclonal antibody light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35731
95 % 139 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 154 162 147
70 % 2074 2553 1
50 % 4216 5180 1
40 % 4741 5834 1
30 % 5910 7269 1
Entity #2 | Chains: H,I
monoclonal antibody heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35732
95 % 1 1 30504 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29263
70 % 2040 2511 2
50 % 4217 5180 1
40 % 4742 5834 1
30 % 5911 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures