Sequence Similarity Clusters for the Entities in PDB 1KF9

Entity #1 | Chains: A,D
PHAGE DISPLAY DERIVED VARIANT HUMAN GROWTH HORMONE protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28250
95 % 2 2 23504 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 6 9 7116
70 % 7 10 6275
50 % 7 10 5870
40 % 7 10 5498
30 % 7 10 4931
Entity #2 | Chains: B,C,E,F
EXTRACELLULAR DOMAIN HUMAN GROWTH HORMONE RECEPTOR (1-238) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8977
95 % 4 5 7794 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 4 5 7743
70 % 4 5 7534
50 % 4 5 6939
40 % 4 5 6447
30 % 4 5 5756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures