Sequence Similarity Clusters for the Entities in PDB 1KF9

Entity #1 | Chains: A,D
PHAGE DISPLAY DERIVED VARIANT HUMAN GROWTH HORMONE protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29934
95 % 2 2 24173 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 6 9 7269
70 % 7 10 6459
50 % 7 10 6023
40 % 7 10 5598
30 % 7 10 4958
Entity #2 | Chains: B,C,E,F
EXTRACELLULAR DOMAIN HUMAN GROWTH HORMONE RECEPTOR (1-238) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 9044
95 % 4 5 8033 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 4 5 7959
70 % 4 5 7689
50 % 4 5 7066
40 % 4 5 6525
30 % 4 5 5708

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures