Sequence Similarity Clusters for the Entities in PDB 1KF6

Entity #1 | Chains: A,M
FUMARATE REDUCTASE FLAVOPROTEIN protein, length: 602 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 5535
95 % 2 13 2406 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 2 13 2475
70 % 2 13 2469
50 % 2 13 2446
40 % 19 65 556
30 % 28 76 470
Entity #2 | Chains: B,N
FUMARATE REDUCTASE IRON-SULFUR PROTEIN protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 2288
95 % 1 12 2572 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 12 2642
70 % 1 12 2619
50 % 1 12 2612
40 % 1 12 2559
30 % 21 69 499
Entity #3 | Chains: C,O
FUMARATE REDUCTASE 15 KDA HYDROPHOBIC PROTEIN protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2599
95 % 1 12 2672 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 12 2739
70 % 1 12 2713
50 % 1 12 2688
40 % 1 12 2619
30 % 1 12 2442
Entity #4 | Chains: D,P
FUMARATE REDUCTASE 13 KDA HYDROPHOBIC PROTEIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 2421
95 % 1 12 2692 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 1 12 2760
70 % 1 12 2732
50 % 1 12 2707
40 % 1 12 2637
30 % 1 12 2456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures