Sequence Similarity Clusters for the Entities in PDB 1KEN

Entity #1 | Chains: A,C,E
hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 1152
95 % 35 38 321 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 35 38 340
70 % 50 55 267
50 % 52 57 290
40 % 276 289 17
30 % 283 296 26
Entity #2 | Chains: B,D,F
hemagglutinin HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 813
95 % 47 52 236 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.1
PDBFlex
90 % 47 52 248
70 % 114 121 85
50 % 272 287 11
40 % 281 297 16
30 % 281 297 27
Entity #3 | Chains: L,U
influenza virus infectivity neutralizing antibody (light chain) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39496
95 % 1 1 30099 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 127 145 141
70 % 1694 1822 2
50 % 4142 4489 1
40 % 4142 4489 1
30 % 4902 5290 1
Entity #4 | Chains: H,T
influenza virus infectivity neutralizing antibody (heavy chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38700
95 % 1 1 29651 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 28547
70 % 2004 2172 1
50 % 4143 4489 1
40 % 4143 4489 1
30 % 4903 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.