Sequence Similarity Clusters for the Entities in PDB 1KEN

Entity #1 | Chains: A,C,E
hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 1193
95 % 44 47 254 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 44 47 267
70 % 59 64 213
50 % 70 75 215
40 % 294 307 16
30 % 301 314 26
Entity #2 | Chains: B,D,F
hemagglutinin HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 831
95 % 56 61 206 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.1
PDBFlex
90 % 56 61 216
70 % 132 139 77
50 % 290 305 11
40 % 299 315 15
30 % 299 315 27
Entity #3 | Chains: L,U
influenza virus infectivity neutralizing antibody (light chain) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40050
95 % 1 1 30501 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 127 145 141
70 % 2077 2264 1
50 % 4214 4587 1
40 % 4214 4587 1
30 % 4978 5392 1
Entity #4 | Chains: H,T
influenza virus infectivity neutralizing antibody (heavy chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39247
95 % 1 1 30048
90 % 1 1 28920
70 % 2041 2222 2
50 % 4215 4587 1
40 % 4215 4587 1
30 % 4979 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.