Sequence Similarity Clusters for the Entities in PDB 1KEN

Entity #1 | Chains: A,C,E
hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 1117
95 % 33 36 327
90 % 33 36 353
70 % 48 53 271
50 % 50 55 292
40 % 257 266 17
30 % 263 272 28
Entity #2 | Chains: B,D,F
hemagglutinin HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 795
95 % 45 50 240
90 % 45 50 252
70 % 100 107 94
50 % 253 264 11
40 % 262 274 16
30 % 262 274 27
Entity #3 | Chains: L,U
influenza virus infectivity neutralizing antibody (light chain) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38580
95 % 1 1 29400
90 % 127 144 136
70 % 1650 1765 2
50 % 4034 4337 1
40 % 4034 4337 1
30 % 4770 5109 1
Entity #4 | Chains: H,T
influenza virus infectivity neutralizing antibody (heavy chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37806
95 % 1 1 28967
90 % 1 1 27897
70 % 1950 2096 1
50 % 4035 4337 1
40 % 4035 4337 1
30 % 4771 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.