Sequence Similarity Clusters for the Entities in PDB 1KEN

Entity #1 | Chains: A,C,E
hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 1258
95 % 44 47 270 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 44 47 284
70 % 66 71 203
50 % 77 82 217
40 % 317 330 17
30 % 325 338 27
Entity #2 | Chains: B,D,F
hemagglutinin HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 871
95 % 63 68 210 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 63 68 221
70 % 139 146 77
50 % 310 325 10
40 % 319 335 15
30 % 319 335 28
Entity #3 | Chains: L,U
influenza virus infectivity neutralizing antibody (light chain) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41840
95 % 1 1 31825
90 % 130 148 140
70 % 2215 2416 1
50 % 4491 4892 1
40 % 4491 4892 1
30 % 5316 5759 1
Entity #4 | Chains: H,T
influenza virus infectivity neutralizing antibody (heavy chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41003
95 % 1 1 31349 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 30141
70 % 2171 2366 2
50 % 4492 4892 1
40 % 4492 4892 1
30 % 5317 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures