Sequence Similarity Clusters for the Entities in PDB 1KEN

Entity #1 | Chains: A,C,E
hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 1210
95 % 44 47 258 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 44 47 273
70 % 66 71 187
50 % 77 82 206
40 % 308 321 16
30 % 315 328 25
Entity #2 | Chains: B,D,F
hemagglutinin HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 838
95 % 63 68 197 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.1
PDBFlex
90 % 63 68 208
70 % 139 146 75
50 % 304 319 10
40 % 313 329 15
30 % 313 329 27
Entity #3 | Chains: L,U
influenza virus infectivity neutralizing antibody (light chain) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40689
95 % 1 1 31010
90 % 127 145 141
70 % 2100 2287 1
50 % 4260 4633 1
40 % 4260 4633 1
30 % 5047 5461 1
Entity #4 | Chains: H,T
influenza virus infectivity neutralizing antibody (heavy chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39880
95 % 1 1 30552 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 29391
70 % 2063 2244 2
50 % 4261 4633 1
40 % 4261 4633 1
30 % 5048 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.