Sequence Similarity Clusters for the Entities in PDB 1KEM

Entity #1 | Chains: L
28B4 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40542
95 % 56 146 145 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 60 156 146
70 % 672 2327 1
50 % 1378 4713 1
40 % 1378 4713 1
30 % 1548 5567 1
Entity #2 | Chains: H
28B4 FAB protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40442
95 % 2 2 30908 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 22 38 1102
70 % 664 2280 2
50 % 1379 4713 1
40 % 1379 4713 1
30 % 1549 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.