Sequence Similarity Clusters for the Entities in PDB 1KEG

Entity #1 | Chains: A
5'-D(*TP*(64T)P*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37049
95 % 84 147 154 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 95 162 147
70 % 1192 2576 1
50 % 2439 5225 1
40 % 2788 5883 1
30 % 3391 7321 1
Entity #3 | Chains: H
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37355
95 % 2 2 31758 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 9 7329
70 % 1182 2532 2
50 % 2440 5225 1
40 % 2789 5883 1
30 % 3392 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WFD 2 H antibody fab fragment heavy chain 10090
2 1EHL 3 H ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN) 10090
3 3WFE 2 H antibody fab fragment heavy chain 10090
4 1KEG 3 H Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) 10090
5 3WFC 2 H antibody fab fragment heavy chain 10090
6 3CMO 2 H, Y Fab heavy chain 10090
7 3O0R 2 H antibody fab fragment heavy chain 10090
8 3WFB 2 H antibody fab fragment heavy chain 10090
9 5GUX 2 H Antibody fab fragment heavy chain antibody fab fragment heavy chain 10090