Sequence Similarity Clusters for the Entities in PDB 1KEG

Entity #1 | Chains: A
5'-D(*TP*(64T)P*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38262
95 % 84 147 166 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 95 162 155
70 % 1233 2670 1
50 % 2525 5421 1
40 % 2886 6121 1
30 % 3501 7588 1
Entity #3 | Chains: H
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38569
95 % 2 2 32774 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 9 7597
70 % 1224 2629 2
50 % 2526 5421 1
40 % 2887 6121 1
30 % 3502 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WFD 2 H antibody fab fragment heavy chain 10090
2 1EHL 3 H ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN) 10090
3 3WFE 2 H antibody fab fragment heavy chain 10090
4 1KEG 3 H Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) 10090
5 3WFC 2 H antibody fab fragment heavy chain 10090
6 3CMO 2 H, Y Fab heavy chain 10090
7 3O0R 2 H antibody fab fragment heavy chain 10090
8 3WFB 2 H antibody fab fragment heavy chain 10090
9 5GUX 2 H Antibody fab fragment heavy chain antibody fab fragment heavy chain 10090