Sequence Similarity Clusters for the Entities in PDB 1KEG

Entity #1 | Chains: A
5'-D(*TP*(64T)P*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37703
95 % 84 147 164 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 95 162 150
70 % 1215 2621 1
50 % 2489 5323 1
40 % 2845 6003 1
30 % 3458 7460 1
Entity #3 | Chains: H
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38006
95 % 2 2 32285 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 9 7466
70 % 1206 2580 2
50 % 2490 5323 1
40 % 2846 6003 1
30 % 3459 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3WFD 2 H antibody fab fragment heavy chain 10090
2 1EHL 3 H ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN) 10090
3 3WFE 2 H antibody fab fragment heavy chain 10090
4 1KEG 3 H Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) 10090
5 3WFC 2 H antibody fab fragment heavy chain 10090
6 3CMO 2 H, Y Fab heavy chain 10090
7 3O0R 2 H antibody fab fragment heavy chain 10090
8 3WFB 2 H antibody fab fragment heavy chain 10090
9 5GUX 2 H Antibody fab fragment heavy chain antibody fab fragment heavy chain 10090