Sequence Similarity Clusters for the Entities in PDB 1KEG

Entity #1 | Chains: A
5'-D(*TP*(64T)P*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37095
95 % 84 147 154 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 95 162 147
70 % 1192 2576 1
50 % 2440 5226 1
40 % 2795 5890 1
30 % 3400 7330 1
Entity #3 | Chains: H
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37394
95 % 2 2 31797 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 9 7348
70 % 1182 2532 2
50 % 2441 5226 1
40 % 2796 5890 1
30 % 3401 7330 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1EHL 2 L ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (LIGHT CHAIN) 10090
2 1KEG 2 L Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) 10090