Sequence Similarity Clusters for the Entities in PDB 1KEG

Entity #1 | Chains: A
5'-D(*TP*(64T)P*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41399
95 % 87 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 95 156 149
70 % 1120 2416 1
50 % 2286 4892 1
40 % 2286 4892 1
30 % 2589 5759 1
Entity #3 | Chains: H
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41085
95 % 2 2 31395 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 9 7156
70 % 1107 2366 2
50 % 2287 4892 1
40 % 2287 4892 1
30 % 2590 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures