Sequence Similarity Clusters for the Entities in PDB 1KEG

Entity #1 | Chains: A
5'-D(*TP*(64T)P*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39015
95 % 89 153 161 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 100 168 147
70 % 1260 2747 1
50 % 2580 5577 1
40 % 2952 6322 1
30 % 3595 7862 1
Entity #3 | Chains: H
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39326
95 % 2 2 33371 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 9 7756
70 % 1251 2706 2
50 % 2581 5577 1
40 % 2953 6322 1
30 % 3596 7862 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures