Sequence Similarity Clusters for the Entities in PDB 1KEC

Entity #1 | Chains: A
PENICILLIN ACYLASE ALPHA SUBUNIT protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62319
95 % 10 21 3018 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 21 3066
70 % 10 21 3039
50 % 10 22 2856
40 % 10 22 2807
30 % 10 22 2632
Entity #2 | Chains: B
PENICILLIN ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52002
95 % 13 24 2461 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 13 24 2526
70 % 13 26 1797
50 % 13 27 1780
40 % 13 29 1676
30 % 13 29 1649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures