Sequence Similarity Clusters for the Entities in PDB 1KDT

Entity #1 | Chains: A,B
CYTIDYLATE KINASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7973
95 % 4 8 5748 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 4 8 5771
70 % 4 8 5644
50 % 4 8 5331
40 % 9 18 2208
30 % 9 18 2083

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures