Sequence Similarity Clusters for the Entities in PDB 1KDQ

Entity #1 | Chains: A
CHYMOTRYPSIN B, B CHAIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66540
95 % 2 2 32573 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 31197
70 % 35 40 1208
50 % 35 40 1250
40 % 40 45 1151
30 % 47 53 983
Entity #2 | Chains: B
CHYMOTRYPSIN B, C CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31873
95 % 2 2 32574 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 31198
70 % 35 40 1217
50 % 41 46 1126
40 % 49 55 958
30 % 49 55 951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures