Sequence Similarity Clusters for the Entities in PDB 1KDQ

Entity #1 | Chains: A
CHYMOTRYPSIN B, B CHAIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67285
95 % 2 2 34417 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 32881
70 % 35 40 1163
50 % 35 40 1203
40 % 37 42 1170
30 % 44 50 1005
Entity #2 | Chains: B
CHYMOTRYPSIN B, C CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70666
95 % 2 2 35699 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 34093
70 % 35 40 1166
50 % 38 43 1135
40 % 46 52 996
30 % 46 52 974

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures