Sequence Similarity Clusters for the Entities in PDB 1KDQ

Entity #1 | Chains: A
CHYMOTRYPSIN B, B CHAIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68526
95 % 2 2 35028 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 33439
70 % 35 40 1185
50 % 35 40 1232
40 % 40 45 1131
30 % 47 53 968
Entity #2 | Chains: B
CHYMOTRYPSIN B, C CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71934
95 % 2 2 36329 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 34668
70 % 35 40 1188
50 % 41 46 1103
40 % 49 55 964
30 % 49 55 945

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures