Sequence Similarity Clusters for the Entities in PDB 1KDQ

Entity #1 | Chains: A
CHYMOTRYPSIN B, B CHAIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66380
95 % 2 2 33925 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 32433
70 % 35 40 1150
50 % 35 40 1186
40 % 37 42 1154
30 % 44 50 994
Entity #2 | Chains: B
CHYMOTRYPSIN B, C CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69738
95 % 2 2 35197 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 33634
70 % 35 40 1153
50 % 38 43 1122
40 % 46 52 988
30 % 46 52 962

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.