Sequence Similarity Clusters for the Entities in PDB 1KDP

Entity #1 | Chains: A,B
CYTIDYLATE KINASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8109
95 % 7 8 5835 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 7 8 5854
70 % 7 8 5726
50 % 7 8 5408
40 % 15 18 2291
30 % 15 18 2114

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3AKE 1 A Cytidylate kinase 274 2.7.4.25 | Details
2 3AKD 1 A Cytidylate kinase 274 2.7.4.25 | Details
3 3AKC 1 A Cytidylate kinase 274 2.7.4.25 | Details
4 3W90 1 A Cytidylate kinase 274 2.7.4.25 | Details
5 1CKE 1 A PROTEIN (CYTIDINE MONOPHOSPHATE KINASE) 562 2.7.4.25 | Details
6 3R20 1 A Cytidylate kinase 1772 2.7.4.14 | Details
7 1KDO 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
8 2FEM 1 A Cytidylate kinase 562 2.7.4.25 | Details
9 1KDT 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
10 2CMK 1 A PROTEIN (CYTIDINE MONOPHOSPHATE KINASE) DOMAIN 562 2.7.4.25 | Details
11 3W8N 1 A Cytidylate kinase 274 2.7.4.25 | Details
12 1KDR 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
13 3R8C 1 A, B Cytidylate kinase 36809 2.7.4.25 | Details
14 2H92 1 A, B, C Cytidylate kinase 1280 2.7.4.14 | Details
15 1KDP 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
16 4DIE 1 A, B, C, D Cytidylate kinase 36809 2.7.4.25 | Details
17 2FEO 1 A Cytidylate kinase 562 2.7.4.25 | Details
18 1Q3T 1 A Cytidylate kinase 1313 2.7.4.14 | Details