Sequence Similarity Clusters for the Entities in PDB 1KDP

Entity #1 | Chains: A,B
CYTIDYLATE KINASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7915
95 % 7 8 5718 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.4
PDBFlex
90 % 7 8 5739
70 % 7 8 5606
50 % 7 8 5298
40 % 15 18 2195
30 % 15 18 2074

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KDO 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
2 1KDT 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
3 2CMK 1 A PROTEIN (CYTIDINE MONOPHOSPHATE KINASE) DOMAIN 562 2.7.4.25 | Details
4 1KDR 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details
5 1KDP 1 A, B CYTIDYLATE KINASE 562 2.7.4.25 | Details