Sequence Similarity Clusters for the Entities in PDB 1KDP

Entity #1 | Chains: A,B
CYTIDYLATE KINASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7203
95 % 7 8 5782 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.4
PDBFlex
90 % 7 8 5794
70 % 7 8 5673
50 % 7 8 5346
40 % 10 13 2623
30 % 15 18 2020

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.