Sequence Similarity Clusters for the Entities in PDB 1KDO

Entity #1 | Chains: A,B
CYTIDYLATE KINASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7044
95 % 2 8 5620 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.7
PDBFlex
90 % 2 8 5628
70 % 2 8 5529
50 % 2 8 5214
40 % 3 13 2572
30 % 7 18 1988

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.