Sequence Similarity Clusters for the Entities in PDB 1KDN

Entity #1 | Chains: A,B,C
NUCLEOSIDE DIPHOSPHATE KINASE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 1229
95 % 6 25 723 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 25 754
70 % 6 25 800
50 % 32 122 59
40 % 42 150 31
30 % 42 151 49

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.