Sequence Similarity Clusters for the Entities in PDB 1KDH

Entity #1 | Chains: D
5'-D(P*(BRU)P*(BRU)P*(BRU)P*(BRU))-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Terminal deoxynucleotidyltransferase short isoform protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 25 1616
95 % 33 34 1492 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 33 34 1522
70 % 33 34 1533
50 % 33 34 1563
40 % 57 58 942
30 % 424 431 106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.