Sequence Similarity Clusters for the Entities in PDB 1KDH

Entity #1 | Chains: D
5'-D(P*(BRU)P*(BRU)P*(BRU)P*(BRU))-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Terminal deoxynucleotidyltransferase short isoform protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 25 1708
95 % 33 34 1565
90 % 33 34 1601
70 % 33 34 1609
50 % 33 34 1650
40 % 71 72 792
30 % 445 452 108

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures