Sequence Similarity Clusters for the Entities in PDB 1KDH

Entity #1 | Chains: D
5'-D(P*(BRU)P*(BRU)P*(BRU)P*(BRU))-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Terminal deoxynucleotidyltransferase short isoform protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 25 2226
95 % 33 34 1755 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 33 34 1792
70 % 33 34 1812
50 % 33 34 1846
40 % 71 72 854
30 % 474 481 115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures