Sequence Similarity Clusters for the Entities in PDB 1KDD

Entity #1 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 7057
95 % 3 3 7584
90 % 3 3 7547
70 % 5 6 3456
50 % 85 113 146
40 % 85 113 162
30 % 85 113 179
Entity #2 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12La16I protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28393
95 % 2 2 12724
90 % 3 3 7546
70 % 6 6 3456
50 % 86 113 146
40 % 86 113 162
30 % 86 113 179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.