Sequence Similarity Clusters for the Entities in PDB 1KDD

Entity #1 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 7380
95 % 3 3 7933
90 % 3 3 7889
70 % 5 6 3576
50 % 86 114 147
40 % 86 114 164
30 % 86 114 182
Entity #2 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12La16I protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29466
95 % 2 2 13246
90 % 3 3 7888
70 % 6 6 3576
50 % 87 114 147
40 % 87 114 164
30 % 87 114 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.