Sequence Similarity Clusters for the Entities in PDB 1KDD

Entity #1 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 3366
95 % 5 6 3671
90 % 5 6 3745
70 % 5 6 3671
50 % 5 6 3593
40 % 5 6 3429
30 % 5 6 3160
Entity #2 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12La16I protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 3366
95 % 6 6 3671
90 % 6 6 3745
70 % 6 6 3671
50 % 6 6 3593
40 % 6 6 3429
30 % 6 6 3160

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures