Sequence Similarity Clusters for the Entities in PDB 1KD9

Entity #1 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 3377
95 % 3 6 3688
90 % 3 6 3762
70 % 3 6 3686
50 % 3 6 3608
40 % 3 6 3443
30 % 3 6 3168
Entity #2 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 3377
95 % 4 6 3688
90 % 4 6 3762
70 % 4 6 3686
50 % 4 6 3608
40 % 4 6 3443
30 % 4 6 3168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures