Sequence Similarity Clusters for the Entities in PDB 1KD9

Entity #1 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30286
95 % 1 2 13588
90 % 2 3 8087
70 % 3 6 3665
50 % 77 114 155
40 % 77 114 171
30 % 77 114 185
Entity #2 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7563
95 % 2 3 8135
90 % 2 3 8088
70 % 4 6 3665
50 % 78 114 155
40 % 78 114 171
30 % 78 114 185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.