Sequence Similarity Clusters for the Entities in PDB 1KD9

Entity #1 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31204
95 % 1 2 14032
90 % 2 3 8348
70 % 3 6 3799
50 % 77 114 165
40 % 77 114 176
30 % 77 114 190
Entity #2 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7842
95 % 2 3 8403
90 % 2 3 8349
70 % 4 6 3799
50 % 78 114 165
40 % 78 114 176
30 % 78 114 190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures