Sequence Similarity Clusters for the Entities in PDB 1KD8

Entity #1 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12Ia16V protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29074
95 % 1 1 24119
90 % 1 3 7768
70 % 1 6 3524
50 % 54 114 146
40 % 54 114 162
30 % 54 114 182
Entity #2 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 7269
95 % 1 3 7808
90 % 1 3 7769
70 % 2 6 3524
50 % 55 114 146
40 % 55 114 162
30 % 55 114 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.