Sequence Similarity Clusters for the Entities in PDB 1KD8

Entity #1 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12Ia16V protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 3360
95 % 1 6 3672
90 % 1 6 3745
70 % 1 6 3669
50 % 1 6 3592
40 % 1 6 3422
30 % 1 6 3157
Entity #2 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 3360
95 % 2 6 3672
90 % 2 6 3745
70 % 2 6 3669
50 % 2 6 3592
40 % 2 6 3422
30 % 2 6 3157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures