Sequence Similarity Clusters for the Entities in PDB 1KD8

Entity #1 | Chains: A,C,F
GCN4 ACID BASE HETERODIMER ACID-d12Ia16V protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29959
95 % 1 1 24862
90 % 1 3 7991
70 % 1 6 3628
50 % 54 114 151
40 % 54 114 168
30 % 54 114 185
Entity #2 | Chains: B,D,E
GCN4 ACID BASE HETERODIMER BASE-d12La16L protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 7461
95 % 1 3 8034
90 % 1 3 7992
70 % 2 6 3628
50 % 55 114 151
40 % 55 114 168
30 % 55 114 185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.