Sequence Similarity Clusters for the Entities in PDB 1KD7

Entity #1 | Chains: A,B,C,K,L,M
TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 316
95 % 6 8 365 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 6 8 390
70 % 6 8 427
50 % 6 8 497
40 % 6 8 544
30 % 6 8 550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures