Sequence Similarity Clusters for the Entities in PDB 1KCS

Entity #1 | Chains: L
PC282 IMMUNOGLOBULIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37905
95 % 2 2 32148 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 30788
70 % 1293 2516 1
50 % 2645 5101 1
40 % 3028 5750 1
30 % 3718 7168 1
Entity #2 | Chains: H
PC282 IMMUNOGLOBULIN protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37906
95 % 2 2 32149 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 30789
70 % 1285 2475 2
50 % 2646 5101 1
40 % 3029 5750 1
30 % 3719 7168 1
Entity #3 | Chains: P
PS1 peptide protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures