Sequence Similarity Clusters for the Entities in PDB 1KCG

Entity #1 | Chains: A,B
NKG2-D type II integral membrane protein protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6656
95 % 3 5 6796 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 5 6786
70 % 5 7 5027
50 % 5 7 4797
40 % 5 7 4515
30 % 232 296 47
Entity #2 | Chains: C
ULBP3 protein protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65533
95 % 1 1 53130
90 % 1 1 50357
70 % 1 1 44015
50 % 2 2 25555
40 % 2 2 22434
30 % 2 2 18699

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures