Sequence Similarity Clusters for the Entities in PDB 1KCG

Entity #1 | Chains: A,B
NKG2-D type II integral membrane protein protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 5935
95 % 3 5 6588 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 3 5 6572
70 % 5 7 4889
50 % 5 7 4682
40 % 5 7 4448
30 % 160 220 104
Entity #2 | Chains: C
ULBP3 protein protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63902
95 % 1 1 44488
90 % 1 1 42203
70 % 1 1 37091
50 % 2 2 23941
40 % 2 2 21056
30 % 2 2 17823

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures