Sequence Similarity Clusters for the Entities in PDB 1KCG

Entity #1 | Chains: A,B
NKG2-D type II integral membrane protein protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6030
95 % 3 5 6689 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 3 5 6683
70 % 5 7 4971
50 % 5 7 4750
40 % 5 7 4503
30 % 160 220 107
Entity #2 | Chains: C
ULBP3 protein protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64730
95 % 1 1 45033
90 % 1 1 42699
70 % 1 1 37513
50 % 2 2 24204
40 % 2 2 21287
30 % 2 2 18025

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures