Sequence Similarity Clusters for the Entities in PDB 1KC6

Entity #1 | Chains: E,F,G,H
5'-D(P*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
TYPE II RESTRICTION ENZYME HINCII protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 2017
95 % 16 18 1149 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.8
PDBFlex
90 % 16 18 1172
70 % 16 18 1201
50 % 16 18 1255
40 % 16 18 1264
30 % 16 18 1242

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures