Sequence Similarity Clusters for the Entities in PDB 1KBY

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 90 368
95 % 33 97 404 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 33 97 438
70 % 33 97 476
50 % 50 131 408
40 % 50 131 433
30 % 50 131 432
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 56 677
95 % 33 97 408 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 33 97 441
70 % 33 97 479
50 % 50 131 409
40 % 50 131 432
30 % 50 131 431
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 96 333
95 % 33 97 413 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 33 97 444
70 % 33 97 483
50 % 33 97 531
40 % 50 131 434
30 % 50 131 434

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2J8C 1 H REACTION CENTER PROTEIN H CHAIN PH 8 NEUTRAL STATE 1063
2 1RZH 3 H Reaction center protein H chain 1063
3 3I4D 3 H Reaction center protein H chain 1063
4 1QOV 1 H PHOTOSYNTHETIC REACTION CENTER 1063
5 2J8D 1 H REACTION CENTER PROTEIN H CHAIN PH 8 NEUTRAL STATE 1063
6 2UWW 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
7 2UWU 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 NEUTRAL STATE, 2ND DATASET 1063
8 4IN5 3 H Reaction center protein H chain 1063
9 2JIY 1 H REACTION CENTER PROTEIN H CHAIN 1063
10 1E6D 1 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
11 1RY5 3 H Reaction center protein H chain 1063
12 2GNU 1 H Reaction center protein H chain Reaction Center Protein H chain, Cytoplasmic domain, residue 11-245 1063
13 2UX5 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
14 2UXJ 1 H REACTION CENTER PROTEIN H CHAIN PH 10 NEUTRAL STATE 1063
15 1YF6 3 H Reaction center protein H chain 1063
16 2UWV 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
17 1RG5 3 H Reaction center protein H chain 1063
18 2UXK 1 H REACTION CENTER PROTEIN H CHAIN PH 10 CHARGE-SEPARATED STATE 1063
19 2BOZ 1 H REACTION CENTER PROTEIN H CHAIN 1063
20 3ZUW 1 H REACTION CENTER PROTEIN H CHAIN 1063
21 1AIJ 3 H, T PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
22 4TQQ 1 H Reaction center protein H chain 1063
23 5LSE 3 H Reaction center protein H chain Missing N and C-terminal residues unobserved in electron density 1063
24 2HG9 3 H Reaction center protein H chain 1063
25 2HHK 3 H Reaction center protein H chain 1063
26 5LRI 3 H Reaction center protein H chain 1063
27 2UX3 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
28 2HH1 3 H Reaction center protein H chain 1063
29 1OGV 1 H REACTION CENTER PROTEIN H CHAIN CYTOPLASMIC DOMAIN, RESIDUES 11-260 1063
30 2UX4 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
31 1M3X 3 H Photosynthetic Reaction center protein H chain 1063
32 1RQK 3 H Reaction center protein H chain 1063
33 1KBY 3 H PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN 1063
34 2HG3 3 H Reaction center protein H chain 1063
35 3ZUM 1 H REACTION CENTER PROTEIN H CHAIN 1063
36 2UWT 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
37 1RZZ 3 H, T Reaction center protein H chain 1063
38 1MPS 3 H PHOTOSYNTHETIC REACTION CENTER 1063
39 1L9B 3 H REACTION CENTER PROTEIN H CHAIN 1063
40 1PCR 3 H PHOTOSYNTHETIC REACTION CENTER 1063
41 2BNS 3 C REACTION CENTRE PROTEIN H CHAIN 1063
42 4IN6 3 H Reaction center protein H chain 1063
43 2GMR 3 H Photosynthetic reaction center protein H chain 1063
44 4N7L 1 H Reaction center protein H chain 1063
45 2UXM 1 H REACTION CENTER PROTEIN H CHAIN PH 10 CHARGE-SEPARATED STATE 1063
46 2HIT 3 H Reaction center protein H chain 1063
47 4IN7 1 H Reaction center protein H chain 1063
48 4HBJ 3 H Reaction center protein H chain 1063
49 1DV3 3 H, T PHOTOSYNTHETIC REACTION CENTER REACTION CENTER H CHAIN 1063
50 1DS8 3 H, T REACTION CENTER PROTEIN H CHAIN 1063
51 1AIG 3 H, P PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
52 2UXL 1 H REACTION CENTER PROTEIN H CHAIN PH 10 NEUTRAL STATE 1063
53 4H9L 3 H Reaction center protein H chain 1063
54 1FNP 3 H REACTION CENTER PROTEIN H CHAIN 1063
55 1FNQ 3 H REACTION CENTER PROTEIN H CHAIN 1063
56 1RGN 3 H Reaction center protein H chain 1063
57 4N7K 1 H Reaction Center H Chain 1063
58 3DU3 3 H Reaction center protein H chain 1063
59 4H99 3 H Reaction center protein H chain 1063
60 3DUQ 3 H Reaction center protein H chain 1063
61 1S00 3 H, T Reaction center protein H chain 1063
62 2BNP 3 C REACTION CENTRE PROTEIN H CHAIN 1063
63 2HJ6 3 H Reaction center protein H chain 1063
64 1JGZ 3 H Photosynthetic Reaction Center H subunit 1063
65 1DV6 3 H, T PHOTOSYNTHETIC REACTION CENTER H CHAIN 1063
66 4HBH 3 H Reaction center protein H chain 1063
67 1JGY 3 H Photosynthetic Reaction Center H Subunit 1063
68 2JJ0 1 H REACTION CENTER PROTEIN H CHAIN 1063
69 1JGW 3 H Photosynthetic Reaction Center H subunit 1063
70 1E14 1 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
71 3DSY 3 H Reaction center protein H chain 1063
72 1RVJ 3 H Reaction center protein H chain 1063
73 2UWS 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
74 2WX5 1 H REACTION CENTER PROTEIN H CHAIN 1063
75 3V3Z 1 H Reaction center protein H chain 1063
76 1F6N 3 H REACTION CENTER PROTEIN H CHAIN 1063
77 1UMX 1 H REACTION CENTER PROTEIN H CHAIN 1063
78 3DU2 3 H Reaction center protein H chain 1063
79 4RCR 3 H PHOTOSYNTHETIC REACTION CENTER 1063
80 1K6L 3 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
81 4LWY 1 H Reaction center protein H chain 1063
82 3DTR 3 H Reaction center protein H chain 1063
83 1JGX 3 H Photosynthetic Reaction Center H subunit 1063
84 1K6N 3 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
85 1PST 3 H PHOTOSYNTHETIC REACTION CENTER 1063
86 3DTA 3 H Reaction center protein H chain 1063
87 3DTS 3 H Reaction center protein H chain 1063
88 3V3Y 1 H Reaction center protein H chain 1063
89 1PSS 3 H PHOTOSYNTHETIC REACTION CENTER 1063
90 2RCR 3 H PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
91 1YST 3 H PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
92 5V33 1 H Reaction center protein H chain UNP residues 11-250 1063
93 1JH0 3 H Photosynthetic Reaction Center H subunit 1063
94 1L9J 3 H, T REACTION CENTER PROTEIN H CHAIN 1063
95 1Z9J 3 C Reaction center protein H chain 1063
96 4V9G 4 AH, BH Reaction center protein H chain 1063
97 1Z9K 3 C Reaction center protein H chain 1063