Sequence Similarity Clusters for the Entities in PDB 1KBY

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 90 407
95 % 33 97 448 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 33 97 485
70 % 33 97 518
50 % 50 131 432
40 % 50 131 458
30 % 50 131 458
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 56 713
95 % 33 97 450 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 33 97 487
70 % 33 97 520
50 % 50 131 433
40 % 50 131 457
30 % 50 131 457
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 96 363
95 % 33 97 453 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 33 97 489
70 % 33 97 522
50 % 33 97 564
40 % 50 131 459
30 % 50 131 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WJN 2 H REACTION CENTER PROTEIN H CHAIN 1079
2 3T6E 2 H Reaction center protein H chain 1079
3 2J8C 1 H REACTION CENTER PROTEIN H CHAIN PH 8 NEUTRAL STATE 1063
4 5Y5S 4 H Photosynthetic reaction center H subunit 1050
5 2WJM 2 H REACTION CENTER PROTEIN H CHAIN 1079
6 2I5N 2 H Reaction center protein H chain 1079
7 1RZH 3 H Reaction center protein H chain 1063
8 3T6D 2 H Photosynthetic reaction center H-subunit 1079
9 3I4D 3 H Reaction center protein H chain 1063
10 1QOV 1 H PHOTOSYNTHETIC REACTION CENTER 1063
11 1DXR 2 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1079
12 2J8D 1 H REACTION CENTER PROTEIN H CHAIN PH 8 NEUTRAL STATE 1063
13 2UWW 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
14 2UWU 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 NEUTRAL STATE, 2ND DATASET 1063
15 4IN5 3 H Reaction center protein H chain 1063
16 2JIY 1 H REACTION CENTER PROTEIN H CHAIN 1063
17 1VRN 2 H Reaction center protein H chain 1079
18 1E6D 1 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
19 1RY5 3 H Reaction center protein H chain 1063
20 2GNU 1 H Reaction center protein H chain Reaction Center Protein H chain, Cytoplasmic domain, residue 11-245 1063
21 5NJ4 2 H Reaction center protein H chain 1079
22 6PRC 4 H PHOTOSYNTHETIC REACTION CENTER 1079
23 2UX5 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
24 2UXJ 1 H REACTION CENTER PROTEIN H CHAIN PH 10 NEUTRAL STATE 1063
25 1YF6 3 H Reaction center protein H chain 1063
26 2UWV 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
27 1RG5 3 H Reaction center protein H chain 1063
28 2UXK 1 H REACTION CENTER PROTEIN H CHAIN PH 10 CHARGE-SEPARATED STATE 1063
29 1PRC 4 H PHOTOSYNTHETIC REACTION CENTER 1079
30 2BOZ 1 H REACTION CENTER PROTEIN H CHAIN 1063
31 3ZUW 1 H REACTION CENTER PROTEIN H CHAIN 1063
32 3PRC 4 H PHOTOSYNTHETIC REACTION CENTER 1079
33 1AIJ 3 H, T PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
34 4TQQ 1 H Reaction center protein H chain 1063
35 5PRC 4 H PHOTOSYNTHETIC REACTION CENTER 1079
36 5LSE 3 H Reaction center protein H chain Missing N and C-terminal residues unobserved in electron density 1063
37 2HG9 3 H Reaction center protein H chain 1063
38 2JBL 2 H REACTION CENTER PROTEIN H CHAIN 1079
39 2HHK 3 H Reaction center protein H chain 1063
40 5LRI 3 H Reaction center protein H chain 1063
41 2PRC 4 H PHOTOSYNTHETIC REACTION CENTER 1079
42 3G7F 2 H Photosynthetic reaction center H subunit 1079
43 1EYS 4 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1050
44 2UX3 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
45 2HH1 3 H Reaction center protein H chain 1063
46 1OGV 1 H REACTION CENTER PROTEIN H CHAIN CYTOPLASMIC DOMAIN, RESIDUES 11-260 1063
47 2UX4 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
48 1M3X 3 H Photosynthetic Reaction center protein H chain 1063
49 1RQK 3 H Reaction center protein H chain 1063
50 1KBY 3 H PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN 1063
51 2HG3 3 H Reaction center protein H chain 1063
52 3ZUM 1 H REACTION CENTER PROTEIN H CHAIN 1063
53 2UWT 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
54 1RZZ 3 H, T Reaction center protein H chain 1063
55 1MPS 3 H PHOTOSYNTHETIC REACTION CENTER 1063
56 1L9B 3 H REACTION CENTER PROTEIN H CHAIN 1063
57 7PRC 4 H PHOTOSYNTHETIC REACTION CENTER 1079
58 1PCR 3 H PHOTOSYNTHETIC REACTION CENTER 1063
59 5O4C 2 H Reaction center protein H chain 1079
60 2BNS 3 C REACTION CENTRE PROTEIN H CHAIN 1063
61 4IN6 3 H Reaction center protein H chain 1063
62 2GMR 3 H Photosynthetic reaction center protein H chain 1063
63 4N7L 1 H Reaction center protein H chain 1063
64 2UXM 1 H REACTION CENTER PROTEIN H CHAIN PH 10 CHARGE-SEPARATED STATE 1063
65 2HIT 3 H Reaction center protein H chain 1063
66 4IN7 1 H Reaction center protein H chain 1063
67 4HBJ 3 H Reaction center protein H chain 1063
68 1DV3 3 H, T PHOTOSYNTHETIC REACTION CENTER REACTION CENTER H CHAIN 1063
69 1DS8 3 H, T REACTION CENTER PROTEIN H CHAIN 1063
70 1AIG 3 H, P PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
71 2UXL 1 H REACTION CENTER PROTEIN H CHAIN PH 10 NEUTRAL STATE 1063
72 4H9L 3 H Reaction center protein H chain 1063
73 1FNP 3 H REACTION CENTER PROTEIN H CHAIN 1063
74 1FNQ 3 H REACTION CENTER PROTEIN H CHAIN 1063
75 1RGN 3 H Reaction center protein H chain 1063
76 4N7K 1 H Reaction Center H Chain 1063
77 3DU3 3 H Reaction center protein H chain 1063
78 4H99 3 H Reaction center protein H chain 1063
79 3DUQ 3 H Reaction center protein H chain 1063
80 1S00 3 H, T Reaction center protein H chain 1063
81 2BNP 3 C REACTION CENTRE PROTEIN H CHAIN 1063
82 2HJ6 3 H Reaction center protein H chain 1063
83 1JGZ 3 H Photosynthetic Reaction Center H subunit 1063
84 1DV6 3 H, T PHOTOSYNTHETIC REACTION CENTER H CHAIN 1063
85 4HBH 3 H Reaction center protein H chain 1063
86 1JGY 3 H Photosynthetic Reaction Center H Subunit 1063
87 2JJ0 1 H REACTION CENTER PROTEIN H CHAIN 1063
88 1R2C 4 H Reaction center protein H chain 1079
89 5O64 2 H Reaction center protein H chain 1079
90 1JGW 3 H Photosynthetic Reaction Center H subunit 1063
91 1E14 1 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
92 3DSY 3 H Reaction center protein H chain 1063
93 1RVJ 3 H Reaction center protein H chain 1063
94 2UWS 1 H REACTION CENTER PROTEIN H CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
95 2WX5 1 H REACTION CENTER PROTEIN H CHAIN 1063
96 3V3Z 1 H Reaction center protein H chain 1063
97 1F6N 3 H REACTION CENTER PROTEIN H CHAIN 1063
98 1UMX 1 H REACTION CENTER PROTEIN H CHAIN 1063
99 3DU2 3 H Reaction center protein H chain 1063
100 4RCR 3 H PHOTOSYNTHETIC REACTION CENTER 1063
101 1K6L 3 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
102 4LWY 1 H Reaction center protein H chain 1063
103 3DTR 3 H Reaction center protein H chain 1063
104 1JGX 3 H Photosynthetic Reaction Center H subunit 1063
105 1K6N 3 H PHOTOSYNTHETIC REACTION CENTER H SUBUNIT 1063
106 3D38 2 H Reaction center protein H chain 1079
107 1PST 3 H PHOTOSYNTHETIC REACTION CENTER 1063
108 3DTA 3 H Reaction center protein H chain 1063
109 3DTS 3 H Reaction center protein H chain 1063
110 3V3Y 1 H Reaction center protein H chain 1063
111 1PSS 3 H PHOTOSYNTHETIC REACTION CENTER 1063
112 2RCR 3 H PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
113 1YST 3 H PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT) 1063
114 2X5U 2 H REACTION CENTER PROTEIN H CHAIN 1079
115 5V33 1 H Reaction center protein H chain UNP residues 11-250 1063
116 1JH0 3 H Photosynthetic Reaction Center H subunit 1063
117 2X5V 2 H REACTION CENTER PROTEIN H CHAIN 1079
118 1L9J 3 H, T REACTION CENTER PROTEIN H CHAIN 1063
119 5M7L 4 D Reaction center protein H chain 1079
120 5M7K 4 D Reaction center protein H chain 1079
121 5M7J 4 D Reaction center protein H chain 1079
122 5B5M 4 H, t Photosynthetic reaction center H subunit 1050
123 5B5N 4 H, t Photosynthetic reaction center H subunit 1050
124 3WMM 4 H Photosynthetic reaction center H subunit 1050
125 4V8K 4 AH, BH Photosynthetic reaction center H subunit 1050
126 4CAS 4 D REACTION CENTER PROTEIN H CHAIN 1079
127 1Z9J 3 C Reaction center protein H chain 1063
128 4V9G 4 AH, BH Reaction center protein H chain 1063
129 1Z9K 3 C Reaction center protein H chain 1063
130 4AC5 2 H REACTION CENTER PROTEIN H CHAIN 1079
131 6ET5 4 H Reaction center protein H chain Reaction centre H subunit 1079