Sequence Similarity Clusters for the Entities in PDB 1KBY

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 90 366
95 % 33 97 404 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 33 97 438
70 % 33 97 477
50 % 50 131 407
40 % 50 131 433
30 % 50 131 430
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 56 676
95 % 33 97 408 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 33 97 441
70 % 33 97 480
50 % 50 131 408
40 % 50 131 432
30 % 50 131 429
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 96 331
95 % 33 97 413 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 33 97 444
70 % 33 97 484
50 % 33 97 531
40 % 50 131 434
30 % 50 131 432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2J8C 3 M REACTION CENTER PROTEIN M CHAIN PH 8 NEUTRAL STATE 1063
2 1RZH 2 M Reaction center protein M chain 1063
3 3I4D 2 M Reaction center protein M chain 1063
4 2J8D 3 M REACTION CENTER PROTEIN M CHAIN PH 8 NEUTRAL STATE 1063
5 2UWW 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
6 2UWU 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 NEUTRAL STATE, 2ND DATASET 1063
7 1RY5 2 M Reaction center protein M chain 1063
8 2UX5 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
9 2UXJ 3 M REACTION CENTER PROTEIN M CHAIN PH 10 NEUTRAL STATE 1063
10 2UWV 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
11 1RG5 2 M Reaction center protein M chain 1063
12 2UXK 3 M REACTION CENTER PROTEIN M CHAIN PH 10 CHARGE-SEPARATED STATE 1063
13 3ZUW 3 M REACTION CENTER PROTEIN M CHAIN 1063
14 1AIJ 2 M, S PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
15 2HG9 2 M Reaction center protein M chain 1063
16 2HHK 2 M Reaction center protein M chain 1063
17 5LRI 2 M Reaction center protein M chain 1063
18 2UX3 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
19 2HH1 2 M Reaction center protein M chain 1063
20 1OGV 3 M REACTION CENTER PROTEIN M CHAIN 1063
21 2UX4 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
22 1M3X 2 M Photosynthetic Reaction center protein M chain 1063
23 1RQK 2 M Reaction center protein M chain 1063
24 1KBY 2 M PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN 1063
25 2HG3 2 M Reaction center protein M chain 1063
26 3ZUM 3 M REACTION CENTER PROTEIN M CHAIN 1063
27 2UWT 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
28 1RZZ 2 M, S Reaction center protein M chain 1063
29 1L9B 2 M REACTION CENTER PROTEIN M CHAIN 1063
30 1PCR 2 M PHOTOSYNTHETIC REACTION CENTER 1063
31 2BNS 2 B REACTION CENTRE PROTEIN M CHAIN 1063
32 2GMR 2 M Photosynthetic Reaction center protein M chain 1063
33 2UXM 3 M REACTION CENTER PROTEIN M CHAIN PH 10 CHARGE-SEPARATED STATE 1063
34 2HIT 2 M Reaction center protein M chain 1063
35 1DV3 2 M, S PHOTOSYNTHETIC REACTION CENTER REACTION CENTER M CHAIN 1063
36 1DS8 2 M, S REACTION CENTER PROTEIN M CHAIN 1063
37 1AIG 2 M, O PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
38 2UXL 3 M REACTION CENTER PROTEIN M CHAIN PH 10 NEUTRAL STATE 1063
39 1FNP 2 M REACTION CENTER PROTEIN M CHAIN 1063
40 1FNQ 2 M REACTION CENTER PROTEIN M CHAIN 1063
41 1RGN 2 M Reaction center protein M chain 1063
42 1S00 2 M, S Reaction center protein M chain 1063
43 2BNP 2 B REACTION CENTRE PROTEIN M CHAIN 1063
44 2HJ6 2 M Reaction center protein M chain 1063
45 1DV6 2 M, S PHOTOSYNTHETIC REACTION CENTER M CHAIN 1063
46 1JGY 2 M Photosynthetic Reaction Center M Subunit 1063
47 1RVJ 2 M Reaction center protein M chain 1063
48 2UWS 3 M REACTION CENTER PROTEIN M CHAIN PH 6.5 CHARGE-SEPARATED STATE 1063
49 2WX5 3 M REACTION CENTRE PROTEIN M CHAIN 1063
50 1F6N 2 M REACTION CENTER PROTEIN M CHAIN 1063
51 4RCR 2 M PHOTOSYNTHETIC REACTION CENTER 1063
52 1JGX 2 M Photosynthetic Reaction Center M subunit 1063
53 2RCR 2 M PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT) 1063
54 1JH0 2 M Photosynthetic Reaction Center M subunit 1063
55 1L9J 2 M, S REACTION CENTER PROTEIN M CHAIN 1063
56 1Z9K 2 B Reaction center protein M chain 1063