Sequence Similarity Clusters for the Entities in PDB 1KBY

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 68 433
95 % 33 97 345 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 33 97 371
70 % 33 97 407
50 % 49 129 340
40 % 49 129 369
30 % 49 129 369
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35488
95 % 33 97 344 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.9
PDBFlex
90 % 33 97 370
70 % 33 97 405
50 % 49 129 339
40 % 49 129 368
30 % 49 129 368
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 96 250
95 % 33 97 346 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 33 97 372
70 % 33 97 408
50 % 33 97 482
40 % 49 129 370
30 % 49 129 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.