Sequence Similarity Clusters for the Entities in PDB 1KBY

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 90 366
95 % 33 97 404 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 33 97 438
70 % 33 97 477
50 % 50 131 407
40 % 50 131 433
30 % 50 131 430
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 56 676
95 % 33 97 408 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 33 97 441
70 % 33 97 480
50 % 50 131 408
40 % 50 131 432
30 % 50 131 429
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 96 331
95 % 33 97 413 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 33 97 444
70 % 33 97 484
50 % 33 97 531
40 % 50 131 434
30 % 50 131 432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures