Sequence Similarity Clusters for the Entities in PDB 1KBG

Entity #1 | Chains: H
PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 49 434
95 % 33 65 413 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 35 70 388
70 % 424 732 6
50 % 425 737 7
40 % 455 788 10
30 % 493 919 15
Entity #2 | Chains: L
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 136 98
95 % 93 234 63
90 % 93 234 65
70 % 511 936 4
50 % 523 958 3
40 % 523 958 7
30 % 523 958 12
Entity #3 | Chains: P
PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures