Sequence Similarity Clusters for the Entities in PDB 1KBG

Entity #1 | Chains: H
PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 49 420
95 % 33 65 375 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 35 70 369
70 % 417 719 6
50 % 418 724 6
40 % 448 775 10
30 % 486 899 15
Entity #2 | Chains: L
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 135 96
95 % 93 228 60
90 % 93 228 65
70 % 505 916 4
50 % 517 938 3
40 % 517 938 7
30 % 517 938 12
Entity #3 | Chains: P
PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures