Sequence Similarity Clusters for the Entities in PDB 1KBG

Entity #1 | Chains: H
PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 49 374
95 % 33 65 348 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 35 70 353
70 % 397 679 6
50 % 398 684 6
40 % 427 734 10
30 % 460 851 15
Entity #2 | Chains: L
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 133 95
95 % 86 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 86 215 68
70 % 481 870 4
50 % 493 892 4
40 % 493 892 8
30 % 493 892 14
Entity #3 | Chains: P
PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.