Sequence Similarity Clusters for the Entities in PDB 1KBG

Entity #1 | Chains: H
PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 49 432
95 % 33 65 399 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 35 70 374
70 % 422 727 6
50 % 423 732 6
40 % 453 783 10
30 % 491 909 15
Entity #2 | Chains: L
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 135 97
95 % 93 230 63
90 % 93 230 66
70 % 508 924 4
50 % 520 946 3
40 % 520 946 7
30 % 520 946 12
Entity #3 | Chains: P
PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures