Sequence Similarity Clusters for the Entities in PDB 1KB9

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7993
95 % 2 8 6263 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6256
70 % 2 8 6106
50 % 2 8 5706
40 % 2 8 5358
30 % 5 58 602
Entity #10 | Chains: J
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5827
95 % 2 8 6485 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 8 6467
70 % 24 39 1103
50 % 309 576 7
40 % 498 929 5
30 % 558 1056 7
Entity #11 | Chains: K
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5854
95 % 2 8 6507 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6486
70 % 108 191 72
50 % 169 308 21
40 % 499 929 5
30 % 559 1056 7
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5642
95 % 2 8 6306 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6292
70 % 2 8 6137
50 % 2 8 5741
40 % 2 8 5383
30 % 2 8 4832
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11738
95 % 2 8 6285
90 % 2 8 6276
70 % 2 8 6123
50 % 5 57 575
40 % 5 65 449
30 % 5 65 449
Entity #4 | Chains: D
CYTOCHROME C1, HEME PROTEIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 5709
95 % 2 8 6368
90 % 2 8 6353
70 % 2 8 6207
50 % 5 54 615
40 % 5 54 649
30 % 5 62 470
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5773
95 % 2 8 6428 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6411
70 % 2 8 6258
50 % 5 52 666
40 % 5 60 490
30 % 5 60 488
Entity #6 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 10872
95 % 1 6 10864 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 6 10720
70 % 1 6 10173
50 % 1 6 9208
40 % 1 6 8426
30 % 1 6 7420
Entity #7 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5829
95 % 2 8 6487 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 8 6469
70 % 2 8 6316
50 % 2 8 5896
40 % 2 8 5524
30 % 2 8 4958
Entity #8 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5865
95 % 2 8 6517 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6496
70 % 2 8 6342
50 % 2 8 5919
40 % 2 8 5543
30 % 2 8 4981
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 24526
95 % 1 5 13500 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 5 13286
70 % 1 5 12491
50 % 1 5 11141
40 % 1 5 10109
30 % 1 5 8815

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.