Sequence Similarity Clusters for the Entities in PDB 1KB9

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 8324
95 % 2 8 6473 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6474
70 % 2 8 6310
50 % 2 8 5893
40 % 2 8 5529
30 % 5 62 579
Entity #10 | Chains: J
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 6045
95 % 2 8 6701 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 8 6695
70 % 44 76 538
50 % 317 599 6
40 % 506 956 5
30 % 567 1085 7
Entity #11 | Chains: K
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 6072
95 % 2 8 6722 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6712
70 % 108 193 75
50 % 169 312 23
40 % 507 956 5
30 % 568 1085 7
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5855
95 % 2 8 6515 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6510
70 % 2 8 6340
50 % 2 8 5926
40 % 2 8 5555
30 % 2 8 4989
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 12190
95 % 2 8 6496
90 % 2 8 6496
70 % 2 8 6328
50 % 5 61 544
40 % 5 69 442
30 % 5 69 443
Entity #4 | Chains: D
CYTOCHROME C1, HEME PROTEIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 5923
95 % 2 8 6581
90 % 2 8 6575
70 % 2 8 6413
50 % 5 54 636
40 % 5 54 670
30 % 5 62 479
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5990
95 % 2 8 6644 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6637
70 % 2 8 6466
50 % 5 53 691
40 % 5 61 504
30 % 5 61 496
Entity #6 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11293
95 % 1 6 11258 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 6 11114
70 % 1 6 10538
50 % 1 6 9530
40 % 1 6 8712
30 % 1 6 7661
Entity #7 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 6047
95 % 2 8 6702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 8 6696
70 % 2 8 6524
50 % 2 8 6088
40 % 2 8 5696
30 % 2 8 5116
Entity #8 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 6084
95 % 2 8 6735 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6725
70 % 2 8 6549
50 % 2 8 6111
40 % 2 8 5715
30 % 2 8 5139
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25441
95 % 1 5 13978 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 5 13751
70 % 1 5 12908
50 % 1 5 11508
40 % 1 5 10425
30 % 1 5 9088

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures