Sequence Similarity Clusters for the Entities in PDB 1KB9

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7755
95 % 2 8 6041 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6034
70 % 2 8 5902
50 % 2 8 5529
40 % 2 8 5185
30 % 5 55 630
Entity #10 | Chains: J
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5618
95 % 2 8 6264 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 8 6250
70 % 24 39 1068
50 % 284 536 8
40 % 470 882 5
30 % 529 1008 7
Entity #11 | Chains: K
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5652
95 % 2 8 6291 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6273
70 % 108 187 74
50 % 166 301 22
40 % 471 882 5
30 % 530 1008 7
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5430
95 % 2 8 6083 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6069
70 % 2 8 5931
50 % 2 8 5562
40 % 2 8 5211
30 % 2 8 4687
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 11359
95 % 2 8 6063 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 8 6054
70 % 2 8 5918
50 % 5 54 604
40 % 5 62 457
30 % 5 62 457
Entity #4 | Chains: D
CYTOCHROME C1, HEME PROTEIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5497
95 % 2 8 6145 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 8 6129
70 % 2 8 5999
50 % 5 51 652
40 % 5 51 681
30 % 5 59 475
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5557
95 % 2 8 6205 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 8 6191
70 % 2 8 6050
50 % 5 49 700
40 % 5 57 495
30 % 5 57 497
Entity #6 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 10533
95 % 1 6 10522 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 6 10386
70 % 1 6 9845
50 % 1 6 8927
40 % 1 6 8173
30 % 1 6 7189
Entity #7 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5619
95 % 2 8 6265 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 2 8 6251
70 % 2 8 6103
50 % 2 8 5709
40 % 2 8 5341
30 % 2 8 4803
Entity #8 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5665
95 % 2 8 6303 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 2 8 6284
70 % 2 8 6124
50 % 2 8 5729
40 % 2 8 5358
30 % 2 8 4824
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 23743
95 % 1 5 13063 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 5 12860
70 % 1 5 12074
50 % 1 5 10793
40 % 1 5 9797
30 % 1 5 8531

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.