Sequence Similarity Clusters for the Entities in PDB 1KB9

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 8189
95 % 2 8 6387 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6380
70 % 2 8 6223
50 % 2 8 5819
40 % 2 8 5463
30 % 5 58 609
Entity #10 | Chains: J
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5960
95 % 2 8 6612 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 8 6597
70 % 24 39 1123
50 % 316 594 7
40 % 505 948 5
30 % 566 1077 7
Entity #11 | Chains: K
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5988
95 % 2 8 6634 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6616
70 % 108 192 74
50 % 169 309 23
40 % 506 948 5
30 % 567 1077 7
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5769
95 % 2 8 6429 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6416
70 % 2 8 6254
50 % 2 8 5853
40 % 2 8 5490
30 % 2 8 4926
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 12007
95 % 2 8 6409
90 % 2 8 6401
70 % 2 8 6241
50 % 5 57 588
40 % 5 65 460
30 % 5 65 455
Entity #4 | Chains: D
CYTOCHROME C1, HEME PROTEIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 5835
95 % 2 8 6493
90 % 2 8 6479
70 % 2 8 6326
50 % 5 54 624
40 % 5 54 661
30 % 5 62 474
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5902
95 % 2 8 6554 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 8 6538
70 % 2 8 6377
50 % 5 52 682
40 % 5 60 502
30 % 5 60 499
Entity #6 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11120
95 % 1 6 11089 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 6 10946
70 % 1 6 10385
50 % 1 6 9399
40 % 1 6 8599
30 % 1 6 7565
Entity #7 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5962
95 % 2 8 6614 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 8 6599
70 % 2 8 6437
50 % 2 8 6011
40 % 2 8 5630
30 % 2 8 5051
Entity #8 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 6000
95 % 2 8 6645 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 8 6627
70 % 2 8 6460
50 % 2 8 6032
40 % 2 8 5647
30 % 2 8 5072
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25097
95 % 1 5 13773 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 5 13553
70 % 1 5 12740
50 % 1 5 11360
40 % 1 5 10300
30 % 1 5 8978

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures