Sequence Similarity Clusters for the Entities in PDB 1KB5

Entity #1 | Chains: A
KB5-C20 T-CELL ANTIGEN RECEPTOR protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28356
95 % 1 2 23525 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 22775
70 % 3 5 7446
50 % 3 5 6855
40 % 563 882 5
30 % 631 1008 7
Entity #2 | Chains: B
KB5-C20 T-CELL ANTIGEN RECEPTOR protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28325
95 % 1 2 23502 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 1 2 22753
70 % 2 5 11766
50 % 2 5 10517
40 % 2 5 9537
30 % 632 1008 7
Entity #3 | Chains: L
ANTIBODY DESIRE-1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59016
95 % 14 26 1006 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 19 37 746
70 % 1032 1841 2
50 % 2544 4537 1
40 % 2544 4537 1
30 % 2920 5342 1
Entity #4 | Chains: H
ANTIBODY DESIRE-1 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58445
95 % 1 1 41040
90 % 1 1 39155
70 % 1234 2197 1
50 % 2545 4537 1
40 % 2545 4537 1
30 % 2921 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.