Sequence Similarity Clusters for the Entities in PDB 1KB5

Entity #1 | Chains: A
KB5-C20 T-CELL ANTIGEN RECEPTOR protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29273
95 % 1 2 24285 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 23499
70 % 3 5 7700
50 % 3 5 7078
40 % 594 929 5
30 % 663 1056 7
Entity #2 | Chains: B
KB5-C20 T-CELL ANTIGEN RECEPTOR protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29241
95 % 1 2 24261 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 1 2 23476
70 % 2 5 12161
50 % 2 5 10846
40 % 2 5 9832
30 % 664 1056 7
Entity #3 | Chains: L
ANTIBODY DESIRE-1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60674
95 % 14 26 1032 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 19 37 765
70 % 1289 2327 1
50 % 2630 4713 1
40 % 2630 4713 1
30 % 3025 5567 1
Entity #4 | Chains: H
ANTIBODY DESIRE-1 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60079
95 % 1 1 42211
90 % 1 1 40232
70 % 1274 2280 2
50 % 2631 4713 1
40 % 2631 4713 1
30 % 3026 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.