Sequence Similarity Clusters for the Entities in PDB 1KB5

Entity #1 | Chains: A
KB5-C20 T-CELL ANTIGEN RECEPTOR protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26053
95 % 1 2 22978 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 22249
70 % 3 5 7588
50 % 3 5 6986
40 % 228 361 26
30 % 4005 7168 1
Entity #2 | Chains: B
KB5-C20 T-CELL ANTIGEN RECEPTOR protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26052
95 % 1 2 22977 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.0
PDBFlex
90 % 2 5 13171
70 % 2 5 12359
50 % 2 5 10995
40 % 2 5 9895
30 % 4006 7168 1
Entity #3 | Chains: L
ANTIBODY DESIRE-1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2609
95 % 14 26 1076 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 19 37 793
70 % 1399 2516 1
50 % 2858 5101 1
40 % 3260 5750 1
30 % 4007 7168 1
Entity #4 | Chains: H
ANTIBODY DESIRE-1 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60209
95 % 1 1 49139
90 % 6 6 9029
70 % 1386 2475 2
50 % 2859 5101 1
40 % 3261 5750 1
30 % 4008 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures