Sequence Similarity Clusters for the Entities in PDB 1KAF

Entity #1 | Chains: A,B,C,D,E,F
Transcription regulatory protein MOTA protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14285
95 % 1 1 13401 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 1 13178
70 % 1 1 12366
50 % 1 1 10999
40 % 1 1 9899
30 % 1 1 8457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures