Sequence Similarity Clusters for the Entities in PDB 1KAF

Entity #1 | Chains: A,B,C,D,E,F
Transcription regulatory protein MOTA protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13977
95 % 1 1 13274 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 1 13057
70 % 1 1 12281
50 % 1 1 10950
40 % 1 1 9933
30 % 1 1 8655

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures