Sequence Similarity Clusters for the Entities in PDB 1KAC

Entity #1 | Chains: A
PROTEIN (FIBER KNOB PROTEIN) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10789
95 % 1 4 8021 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 7959
70 % 1 4 7718
50 % 1 4 7111
40 % 19 22 976
30 % 27 37 438
Entity #2 | Chains: B
PROTEIN (COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 1097
95 % 6 13 1483 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 6 13 1515
70 % 6 13 1520
50 % 6 13 1570
40 % 6 13 1587
30 % 6 13 1565

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures