Sequence Similarity Clusters for the Entities in PDB 1KAC

Entity #1 | Chains: A
PROTEIN (FIBER KNOB PROTEIN) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10993
95 % 1 4 8157 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 8091
70 % 1 4 7839
50 % 1 4 7224
40 % 19 22 984
30 % 27 37 442
Entity #2 | Chains: B
PROTEIN (COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 1113
95 % 6 13 1505 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 6 13 1535
70 % 6 13 1542
50 % 6 13 1599
40 % 6 13 1607
30 % 6 13 1587

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures