Sequence Similarity Clusters for the Entities in PDB 1KAC

Entity #1 | Chains: A
PROTEIN (FIBER KNOB PROTEIN) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10567
95 % 1 4 7874 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 7820
70 % 1 4 7586
50 % 1 4 6985
40 % 19 22 962
30 % 27 37 426
Entity #2 | Chains: B
PROTEIN (COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 1069
95 % 6 13 1451 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 6 13 1480
70 % 6 13 1485
50 % 6 13 1539
40 % 6 13 1554
30 % 6 13 1532

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.