Sequence Similarity Clusters for the Entities in PDB 1KAC

Entity #1 | Chains: A
PROTEIN (FIBER KNOB PROTEIN) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 9157
95 % 1 4 8393 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 8328
70 % 1 4 8112
50 % 1 4 7456
40 % 19 22 991
30 % 29 39 437
Entity #2 | Chains: B
PROTEIN (COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 13 1295
95 % 6 13 1539 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 6 13 1566
70 % 6 13 1586
50 % 6 13 1634
40 % 6 13 1621
30 % 6 13 1599

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures