Sequence Similarity Clusters for the Entities in PDB 1KA8

Entity #1 | Chains: A,B,C,D,E,F
putative P4-specific DNA primase protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13440
95 % 1 1 12797 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 1 12590
70 % 1 1 11885
50 % 1 1 10600
40 % 1 1 9565
30 % 1 1 8206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures