Sequence Similarity Clusters for the Entities in PDB 1KA8

Entity #1 | Chains: A,B,C,D,E,F
putative P4-specific DNA primase protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12864
95 % 1 1 12251 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 1 12068
70 % 1 1 11399
50 % 1 1 10201
40 % 1 1 9231
30 % 1 1 7927

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures