Sequence Similarity Clusters for the Entities in PDB 1K9M

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 2332
95 % 14 20 2959
90 % 14 20 3002
70 % 15 27 2080
50 % 58 74 672
40 % 58 79 658
30 % 58 79 668
Entity #11 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 406
95 % 58 74 567
90 % 58 74 595
70 % 58 74 628
50 % 58 74 677
40 % 59 77 683
30 % 59 78 677
Entity #12 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 804
95 % 58 68 636
90 % 58 68 663
70 % 58 68 705
50 % 71 174 198
40 % 71 174 217
30 % 148 506 29
Entity #13 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 405
95 % 58 74 566
90 % 58 74 594
70 % 58 74 625
50 % 58 74 673
40 % 58 74 712
30 % 147 488 35
Entity #14 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 2317
95 % 14 20 2940
90 % 14 20 2985
70 % 58 68 697
50 % 71 170 205
40 % 71 170 227
30 % 71 170 233
Entity #15 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 403
95 % 58 74 564
90 % 58 74 592
70 % 58 74 622
50 % 58 76 651
40 % 58 76 693
30 % 58 79 665
Entity #16 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 452
95 % 58 68 637
90 % 58 68 665
70 % 58 68 707
50 % 58 70 729
40 % 58 70 766
30 % 58 70 766
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 2129
95 % 58 68 635
90 % 58 68 661
70 % 58 68 703
50 % 58 68 755
40 % 58 72 738
30 % 58 72 737
Entity #18 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 454
95 % 58 68 640
90 % 58 68 667
70 % 58 68 711
50 % 58 70 730
40 % 58 70 767
30 % 58 71 750
Entity #19 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 67 463
95 % 58 68 633
90 % 58 68 659
70 % 58 68 700
50 % 58 68 752
40 % 58 68 787
30 % 71 173 226
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 411
95 % 58 74 571
90 % 58 74 598
70 % 58 74 631
50 % 58 76 654
40 % 58 78 670
30 % 134 397 57
Entity #21 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 409
95 % 58 74 569
90 % 58 74 597
70 % 58 74 630
50 % 71 178 192
40 % 71 178 208
30 % 71 178 221
Entity #22 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 70 434
95 % 55 70 615
90 % 55 70 641
70 % 55 70 681
50 % 55 70 731
40 % 55 70 769
30 % 55 70 768
Entity #23 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 413
95 % 58 74 572
90 % 58 74 599
70 % 58 74 632
50 % 58 74 678
40 % 58 74 715
30 % 58 74 716
Entity #24 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 450
95 % 58 68 634
90 % 58 68 660
70 % 58 68 701
50 % 58 68 753
40 % 58 70 763
30 % 58 71 747
Entity #25 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 456
95 % 58 68 642
90 % 58 68 669
70 % 58 68 713
50 % 58 68 760
40 % 58 68 792
30 % 58 68 789
Entity #26 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 63 498
95 % 54 63 708
90 % 54 63 740
70 % 54 63 786
50 % 54 63 834
40 % 54 63 854
30 % 54 63 848
Entity #27 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 2393
95 % 14 20 3007
90 % 14 20 3047
70 % 15 21 2800
50 % 21 30 1872
40 % 34 127 292
30 % 55 150 263
Entity #28 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 457
95 % 58 68 643
90 % 58 68 670
70 % 58 68 716
50 % 58 69 739
40 % 58 69 780
30 % 58 69 779
Entity #29 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 20 2400
95 % 58 68 644
90 % 58 68 671
70 % 58 68 717
50 % 71 171 201
40 % 71 171 224
30 % 71 171 231
Entity #3 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 2113
95 % 58 68 630
90 % 58 68 656
70 % 58 68 696
50 % 71 169 204
40 % 71 171 223
30 % 71 171 230
Entity #30 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 455
95 % 58 68 641
90 % 58 68 668
70 % 58 68 712
50 % 58 68 759
40 % 58 68 791
30 % 71 167 238
Entity #4 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 67 460
95 % 58 74 555
90 % 58 74 585
70 % 58 74 617
50 % 58 74 667
40 % 71 178 205
30 % 71 178 218
Entity #5 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 44 797
95 % 58 74 559
90 % 58 74 589
70 % 58 74 621
50 % 58 74 669
40 % 58 76 691
30 % 59 78 674
Entity #6 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 74 404
95 % 58 74 565
90 % 58 74 593
70 % 58 74 623
50 % 58 74 671
40 % 72 178 207
30 % 72 178 220
Entity #7 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 68 449
95 % 58 68 632
90 % 58 68 658
70 % 58 68 699
50 % 58 68 751
40 % 71 172 221
30 % 148 497 32
Entity #8 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 2140
95 % 15 21 2771
90 % 58 68 664
70 % 58 68 706
50 % 82 105 311
40 % 90 120 281
30 % 90 122 279
Entity #9 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 44 791
95 % 55 64 683
90 % 55 64 715
70 % 55 64 758
50 % 55 64 814
40 % 55 64 836
30 % 55 65 822

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.