Sequence Similarity Clusters for the Entities in PDB 1K8W

Entity #1 | Chains: B
5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FHU)P*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3' rna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
tRNA Pseudouridine Synthase B protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54047
95 % 1 3 21589 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.4
PDBFlex
90 % 1 3 20985
70 % 1 3 19324
50 % 1 3 16789
40 % 1 3 14996
30 % 1 3 12851

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.