Sequence Similarity Clusters for the Entities in PDB 1K8W

Entity #1 | Chains: B
5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FHU)P*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3' rna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
tRNA Pseudouridine Synthase B protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55466
95 % 1 3 22213
90 % 1 3 21581
70 % 1 3 19813
50 % 1 3 17188
40 % 1 3 15341
30 % 1 3 13149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures