Sequence Similarity Clusters for the Entities in PDB 1K8R

Entity #1 | Chains: A
Transforming protein P21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 60 498
95 % 138 150 213 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 196 211 99
70 % 198 213 113
50 % 242 261 110
40 % 405 451 21
30 % 681 782 16
Entity #2 | Chains: B
Protein kinase byr2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68640
95 % 1 1 47351
90 % 1 1 44908
70 % 1 1 39363
50 % 1 1 33536
40 % 1 1 29603
30 % 1 1 25037

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.