Sequence Similarity Clusters for the Entities in PDB 1K8R

Entity #1 | Chains: A
Transforming protein P21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 60 511
95 % 216 231 78 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 221 236 78
70 % 223 238 93
50 % 267 287 97
40 % 430 478 21
30 % 713 817 16
Entity #2 | Chains: B
Protein kinase byr2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69957
95 % 1 1 48181
90 % 1 1 45654
70 % 1 1 39988
50 % 1 1 34043
40 % 1 1 30038
30 % 1 1 25389

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures