Sequence Similarity Clusters for the Entities in PDB 1K8R

Entity #1 | Chains: A
Transforming protein P21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 60 518
95 % 218 233 79 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 223 238 79
70 % 225 240 93
50 % 269 289 97
40 % 435 483 21
30 % 718 822 16
Entity #2 | Chains: B
Protein kinase byr2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70743
95 % 1 1 48704
90 % 1 1 46132
70 % 1 1 40391
50 % 1 1 34383
40 % 1 1 30339
30 % 1 1 25644

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures