Sequence Similarity Clusters for the Entities in PDB 1K8R

Entity #1 | Chains: A
Transforming protein P21/H-RAS-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 75 80 405
95 % 143 155 211 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 229 244 76
70 % 231 246 91
50 % 275 294 99
40 % 445 492 23
30 % 733 837 14
Entity #2 | Chains: B
Protein kinase byr2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47014
95 % 1 1 39064
90 % 1 1 37246
70 % 1 1 33006
50 % 1 1 28038
40 % 1 1 24580
30 % 1 1 20471

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures