Sequence Similarity Clusters for the Entities in PDB 1K8K

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2465
95 % 1 19 3113 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 19 3158
70 % 1 19 3134
50 % 1 20 2809
40 % 1 20 2760
30 % 57 253 36
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 18 2706
95 % 1 19 3122 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.1
PDBFlex
90 % 1 19 3168
70 % 1 19 3145
50 % 1 19 3075
40 % 57 233 23
30 % 58 253 36
Entity #3 | Chains: C
ARP2/3 COMPLEX 41 KDA SUBUNIT protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4359
95 % 1 19 3133 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3178
70 % 1 19 3154
50 % 1 19 3084
40 % 1 20 2767
30 % 1 20 2596
Entity #4 | Chains: D
ARP2/3 COMPLEX 34 KDA SUBUNIT protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2527
95 % 1 19 3174 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3222
70 % 1 19 3196
50 % 1 19 3124
40 % 1 20 2784
30 % 1 20 2610
Entity #5 | Chains: E
ARP2/3 COMPLEX 21 KDA SUBUNIT protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2604
95 % 1 19 3256 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 1 19 3299
70 % 1 19 3261
50 % 1 20 2867
40 % 1 20 2817
30 % 1 20 2645
Entity #6 | Chains: F
ARP2/3 COMPLEX 20 KDA SUBUNIT protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2606
95 % 1 19 3262 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 1 19 3307
70 % 1 19 3267
50 % 1 20 2871
40 % 1 20 2823
30 % 1 20 2649
Entity #7 | Chains: G
ARP2/3 COMPLEX 16 KDA SUBUNIT protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4498
95 % 1 19 3277 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 1 19 3320
70 % 1 19 3280
50 % 1 19 3192
40 % 1 19 3106
30 % 1 19 2911

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures