Sequence Similarity Clusters for the Entities in PDB 1K8K

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2395
95 % 1 19 3029 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 19 3080
70 % 1 19 3058
50 % 1 20 2742
40 % 1 20 2698
30 % 57 231 54
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 18 2623
95 % 1 19 3036 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.1
PDBFlex
90 % 1 19 3088
70 % 1 19 3068
50 % 1 19 3006
40 % 57 211 41
30 % 58 231 54
Entity #3 | Chains: C
ARP2/3 COMPLEX 41 KDA SUBUNIT protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4251
95 % 1 19 3047 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3098
70 % 1 19 3077
50 % 1 19 3015
40 % 1 20 2705
30 % 1 20 2539
Entity #4 | Chains: D
ARP2/3 COMPLEX 34 KDA SUBUNIT protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2454
95 % 1 19 3088 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3141
70 % 1 19 3119
50 % 1 19 3056
40 % 1 20 2721
30 % 1 20 2551
Entity #5 | Chains: E
ARP2/3 COMPLEX 21 KDA SUBUNIT protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2528
95 % 1 19 3168 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 1 19 3215
70 % 1 19 3180
50 % 1 20 2800
40 % 1 20 2759
30 % 1 20 2587
Entity #6 | Chains: F
ARP2/3 COMPLEX 20 KDA SUBUNIT protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2530
95 % 1 19 3175 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 1 19 3223
70 % 1 19 3186
50 % 1 20 2804
40 % 1 20 2765
30 % 1 20 2591
Entity #7 | Chains: G
ARP2/3 COMPLEX 16 KDA SUBUNIT protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4379
95 % 1 19 3190 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 1 19 3236
70 % 1 19 3199
50 % 1 19 3122
40 % 1 19 3043
30 % 1 19 2855

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.