Sequence Similarity Clusters for the Entities in PDB 1K8K

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2314
95 % 1 19 2939 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 19 2989
70 % 1 19 2974
50 % 1 20 2672
40 % 1 20 2631
30 % 57 226 53
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 18 2537
95 % 1 19 2946 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.2
PDBFlex
90 % 1 19 2997
70 % 1 19 2984
50 % 1 19 2931
40 % 57 206 47
30 % 58 226 53
Entity #3 | Chains: C
ARP2/3 COMPLEX 41 KDA SUBUNIT protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4081
95 % 1 19 2956 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3006
70 % 1 19 2992
50 % 1 19 2939
40 % 1 20 2640
30 % 1 20 2479
Entity #4 | Chains: D
ARP2/3 COMPLEX 34 KDA SUBUNIT protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2370
95 % 1 19 2996 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3048
70 % 1 19 3033
50 % 1 19 2978
40 % 1 20 2656
30 % 1 20 2491
Entity #5 | Chains: E
ARP2/3 COMPLEX 21 KDA SUBUNIT protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2445
95 % 1 19 3075 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 1 19 3121
70 % 1 19 3095
50 % 1 20 2731
40 % 1 20 2689
30 % 1 20 2520
Entity #6 | Chains: F
ARP2/3 COMPLEX 20 KDA SUBUNIT protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 2447
95 % 1 19 3080
90 % 1 19 3127
70 % 1 19 3099
50 % 1 20 2735
40 % 1 20 2695
30 % 1 20 2524
Entity #7 | Chains: G
ARP2/3 COMPLEX 16 KDA SUBUNIT protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4210
95 % 1 19 3094 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 1 19 3140
70 % 1 19 3112
50 % 1 19 3039
40 % 1 19 2960
30 % 1 19 2775

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.