Sequence Similarity Clusters for the Entities in PDB 1K8K

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2496
95 % 1 19 3157 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 19 3203
70 % 1 19 3173
50 % 1 20 2850
40 % 1 20 2801
30 % 57 254 42
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 18 2744
95 % 1 19 3167 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.1
PDBFlex
90 % 1 19 3214
70 % 1 19 3185
50 % 1 19 3121
40 % 57 234 24
30 % 58 254 42
Entity #3 | Chains: C
ARP2/3 COMPLEX 41 KDA SUBUNIT protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4447
95 % 1 19 3178 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3224
70 % 1 19 3194
50 % 1 19 3130
40 % 1 20 2807
30 % 1 20 2632
Entity #4 | Chains: D
ARP2/3 COMPLEX 34 KDA SUBUNIT protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2559
95 % 1 19 3219 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 19 3269
70 % 1 19 3237
50 % 1 19 3171
40 % 1 20 2825
30 % 1 20 2646
Entity #5 | Chains: E
ARP2/3 COMPLEX 21 KDA SUBUNIT protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2641
95 % 1 19 3303 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 1 19 3348
70 % 1 19 3305
50 % 1 20 2912
40 % 1 20 2859
30 % 1 20 2681
Entity #6 | Chains: F
ARP2/3 COMPLEX 20 KDA SUBUNIT protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 19 2643
95 % 1 19 3309 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 1 19 3356
70 % 1 19 3311
50 % 1 20 2916
40 % 1 20 2865
30 % 1 20 2685
Entity #7 | Chains: G
ARP2/3 COMPLEX 16 KDA SUBUNIT protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4591
95 % 1 19 3325 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 1 19 3370
70 % 1 19 3325
50 % 1 19 3242
40 % 1 19 3150
30 % 1 19 2953

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures