Sequence Similarity Clusters for the Entities in PDB 1K8I

Entity #1 | Chains: A
MHC class II H2-M alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64767
95 % 1 1 52599
90 % 1 1 49847
70 % 6 6 9882
50 % 6 6 8922
40 % 6 6 8108
30 % 294 355 99
Entity #2 | Chains: B
MHC class II H2-M beta 2 chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64766
95 % 1 1 52598
90 % 1 1 49846
70 % 6 6 9881
50 % 6 6 8921
40 % 6 6 8107
30 % 295 355 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1HDM 2 B PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) EXTRACELLULAR DOMAINS 9606
2 2BC4 2 B, D HLA class II histocompatibility antigen, DM beta chain 9606
3 4FQX 2 D HLA class II histocompatibility antigen, DM beta chain unp residues 19-211 9606
4 4GBX 2 D HLA class II histocompatibility antigen, DM beta chain 9606
5 4I0P 2 B, F HLA class II histocompatibility antigen, DM beta chain 9606
6 1K8I 2 B MHC class II H2-M beta 2 chain 10090