Sequence Similarity Clusters for the Entities in PDB 1K8I

Entity #1 | Chains: A
MHC class II H2-M alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65961
95 % 1 1 53509
90 % 1 1 50680
70 % 6 6 10099
50 % 6 6 9087
40 % 6 6 8254
30 % 298 359 100
Entity #2 | Chains: B
MHC class II H2-M beta 2 chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65960
95 % 1 1 53508
90 % 1 1 50679
70 % 6 6 10098
50 % 6 6 9086
40 % 6 6 8253
30 % 299 359 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1HDM 2 B PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) EXTRACELLULAR DOMAINS 9606
2 2BC4 2 B, D HLA class II histocompatibility antigen, DM beta chain 9606
3 4FQX 2 D HLA class II histocompatibility antigen, DM beta chain unp residues 19-211 9606
4 4GBX 2 D HLA class II histocompatibility antigen, DM beta chain 9606
5 4I0P 2 B, F HLA class II histocompatibility antigen, DM beta chain 9606
6 1K8I 2 B MHC class II H2-M beta 2 chain 10090