Sequence Similarity Clusters for the Entities in PDB 1K8I

Entity #1 | Chains: A
MHC class II H2-M alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62824
95 % 1 1 51070
90 % 1 1 48449
70 % 6 6 9501
50 % 6 6 8606
40 % 6 6 7830
30 % 275 334 104
Entity #2 | Chains: B
MHC class II H2-M beta 2 chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62823
95 % 1 1 51069
90 % 1 1 48448
70 % 6 6 9500
50 % 6 6 8605
40 % 6 6 7829
30 % 276 334 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1HDM 2 B PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) EXTRACELLULAR DOMAINS 9606
2 2BC4 2 B, D HLA class II histocompatibility antigen, DM beta chain 9606
3 4FQX 2 D HLA class II histocompatibility antigen, DM beta chain unp residues 19-211 9606
4 4GBX 2 D HLA class II histocompatibility antigen, DM beta chain 9606
5 4I0P 2 B, F HLA class II histocompatibility antigen, DM beta chain 9606
6 1K8I 2 B MHC class II H2-M beta 2 chain 10090