Sequence Similarity Clusters for the Entities in PDB 1K8I

Entity #1 | Chains: A
MHC class II H2-M alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78254
95 % 1 1 55237
90 % 1 1 52170
70 % 6 6 10479
50 % 6 6 9234
40 % 6 6 8773
30 % 6 6 8137
Entity #2 | Chains: B
MHC class II H2-M beta 2 chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78253
95 % 1 1 55236
90 % 1 1 52169
70 % 6 6 10343
50 % 6 6 9522
40 % 6 6 9028
30 % 6 6 8344

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures