Sequence Similarity Clusters for the Entities in PDB 1K8I

Entity #1 | Chains: A
MHC class II H2-M alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64052
95 % 1 1 44609
90 % 1 1 42306
70 % 6 6 9120
50 % 6 6 8259
40 % 6 6 7586
30 % 275 334 98
Entity #2 | Chains: B
MHC class II H2-M beta 2 chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64053
95 % 1 1 44610
90 % 1 1 42307
70 % 6 6 9121
50 % 6 6 8260
40 % 6 6 7587
30 % 276 334 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures