Sequence Similarity Clusters for the Entities in PDB 1K8I

Entity #1 | Chains: A
MHC class II H2-M alpha chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63244
95 % 1 1 51400
90 % 1 1 48740
70 % 6 6 9556
50 % 6 6 8649
40 % 6 6 7866
30 % 292 353 85
Entity #2 | Chains: B
MHC class II H2-M beta 2 chain protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63243
95 % 1 1 51399
90 % 1 1 48739
70 % 6 6 9555
50 % 6 6 8648
40 % 6 6 7865
30 % 293 353 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures