Sequence Similarity Clusters for the Entities in PDB 1K8G

Entity #1 | Chains: D,E
5'-D(TP*TP*GP*GP*GP*G)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
Telomere-Binding Protein alpha Subunit protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26349
95 % 1 1 22152 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 21526
70 % 1 1 19741
50 % 1 1 17130
40 % 1 1 15294
30 % 1 1 13110

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.