Sequence Similarity Clusters for the Entities in PDB 1K8G

Entity #1 | Chains: D,E
5'-D(TP*TP*GP*GP*GP*G)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
Telomere-Binding Protein alpha Subunit protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27330
95 % 1 1 22931 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 22253
70 % 1 1 20407
50 % 1 1 17668
40 % 1 1 15754
30 % 1 1 13503

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures